CRISPRone

CRISPRone report for GCA_900685255.1_5352_3_9

♦ Seq 1: CAACZC010000013.1 Clostridioides difficile strain lon004 genome assembly, contig: ERS013005SCcontig000013, whole genome shotgun sequence

⇒Summary: seq-len = 125467 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 69148-75680 bp Zoom in on locus 1 x10 CRISPR array Location: 69148-69770 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 69148-69770 bp Num of repeats: 10 Spacers: s1-s9 Gene: COG1203:cas3 Type: Type-I Location: 70023-72008 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 72019-73089 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 73110-74276 bp Gene: pfam01881:cas6 Type: other Location: 74278-75042 bp Gene: cd09693:cas5 Type: Type-I Location: 75033-75680 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 69148-69770 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAACZC010000002.1 Clostridioides difficile strain lon004 genome assembly, contig: ERS013005SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 309605 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 112311-113135 bp Zoom in on locus 1 x13 CRISPR array Location: 112311-113135 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 112311-113135 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 112311-113135 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAACZC010000005.1 Clostridioides difficile strain lon004 genome assembly, contig: ERS013005SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 236284 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 183336-191211 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 183336-184445 bp Gene: pfam01881:cas6 Type: other Location: 184704-185441 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 185446-186921 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 186941-187954 bp Gene: cd09693:cas5 Type: Type-I Location: 187970-188776 bp Gene: cd09641:cas3HD Type: Type-I Location: 188803-191211 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAACZC010000001.1 Clostridioides difficile strain lon004 genome assembly, contig: ERS013005SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 555932 bp; # of CRISPR array = 5; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23150-25660 bp 2 Locus 2: 131005-131298 bp 3 Locus 3: 229300-229986 bp 4 Locus 4: 438375-439332 bp Zoom in on locus 1 x5 x6 Zoom in on locus 2 x5 Zoom in on locus 3 x11 Zoom in on locus 4 x15 CRISPR array Location: 23150-23439 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 23150-23439 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 25304-25660 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 25304-25660 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 131005-131298 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 131005-131298 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 229300-229986 bp Num of repeats: 11 Spacers: s14-s23 CRISPR array Location: 229300-229986 bp Num of repeats: 11 Spacers: s14-s23 CRISPR array Location: 438375-439332 bp Num of repeats: 15 Spacers: s24-s37 CRISPR array Location: 438375-439332 bp Num of repeats: 15 Spacers: s24-s37 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23150-23439 bp]: array | spacers
           [Locus range 25304-25660 bp]: array | spacers
           [Locus range 131005-131298 bp]: array | spacers
           [Locus range 229300-229986 bp]: array | spacers
           [Locus range 438375-439332 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAACZC010000017.1 Clostridioides difficile strain lon004 genome assembly, contig: ERS013005SCcontig000017, whole genome shotgun sequence

⇒Summary: seq-len = 99010 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44798-45424 bp 2 Locus 2: 87041-87136 bp Zoom in on locus 1 x10 Zoom in on locus 2 x2 CRISPR array Location: 44798-45424 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 44798-45424 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 87041-87136 bp Num of repeats: 2 Spacers: s10-s10 CRISPR array Location: 87041-87136 bp Num of repeats: 2 Spacers: s10-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 44798-45424 bp]: array | spacers
           [Locus range 87041-87136 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAACZC010000009.1 Clostridioides difficile strain lon004 genome assembly, contig: ERS013005SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 140933 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113360-124542 bp Zoom in on locus 1 x25 CRISPR array Location: 113360-114977 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 113360-114977 bp Num of repeats: 25 Spacers: s1-s24 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 114206-114439 bp Gene: unk Type: unknown Location: 114661-114828 bp Gene: cd09725:cas2 Type: universal Location: 115161-115427 bp Gene: cd09722:cas1 Type: universal Location: 115430-116410 bp Gene: pfam01930:cas4 Type: Type-I Location: 116413-116931 bp Gene: COG1203:cas3 Type: Type-I Location: 116979-119300 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 119311-120012 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 120014-120928 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 120930-122807 bp Gene: pfam01881:cas6 Type: other Location: 122813-123607 bp Gene: pfam13280:WYL Type: other Location: 123628-124542 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 113360-114977 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)