CRISPRone

CRISPRone report for GCA_900686325.1_5578_5_11

♦ Seq 1: CAACZG010000001.1 Clostridioides difficile strain BI-10 genome assembly, contig: ERS017143SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 426422 bp; # of CRISPR array = 5; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23150-25660 bp 2 Locus 2: 118043-118336 bp 3 Locus 3: 215620-216306 bp 4 Locus 4: 424695-425648 bp Zoom in on locus 1 x5 x6 Zoom in on locus 2 x5 Zoom in on locus 3 x11 Zoom in on locus 4 x15 CRISPR array Location: 23150-23439 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 23150-23439 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 25304-25660 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 25304-25660 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 118043-118336 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 118043-118336 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 215620-216306 bp Num of repeats: 11 Spacers: s14-s23 CRISPR array Location: 215620-216306 bp Num of repeats: 11 Spacers: s14-s23 CRISPR array Location: 424695-425648 bp Num of repeats: 15 Spacers: s24-s37 CRISPR array Location: 424695-425648 bp Num of repeats: 15 Spacers: s24-s37 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23150-23439 bp]: array | spacers
           [Locus range 25304-25660 bp]: array | spacers
           [Locus range 118043-118336 bp]: array | spacers
           [Locus range 215620-216306 bp]: array | spacers
           [Locus range 424695-425648 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAACZG010000009.1 Clostridioides difficile strain BI-10 genome assembly, contig: ERS017143SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 168831 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 141372-152421 bp Zoom in on locus 1 x23 CRISPR array Location: 141372-142856 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 141372-142856 bp Num of repeats: 23 Spacers: s1-s22 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 142218-142451 bp Gene: unk Type: unknown Location: 142673-142840 bp Gene: cd09725:cas2 Type: universal Location: 143040-143306 bp Gene: cd09722:cas1 Type: universal Location: 143309-144289 bp Gene: pfam01930:cas4 Type: Type-I Location: 144292-144810 bp Gene: COG1203:cas3 Type: Type-I Location: 144858-147179 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 147190-147891 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 147893-148807 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 148809-150686 bp Gene: pfam01881:cas6 Type: other Location: 150692-151486 bp Gene: pfam13280:WYL Type: other Location: 151507-152421 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 141372-142856 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAACZG010000003.1 Clostridioides difficile strain BI-10 genome assembly, contig: ERS017143SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 310029 bp; # of CRISPR array = 1; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 50971-53615 bp 2 Locus 2: 112835-113920 bp Zoom in on locus 1 Zoom in on locus 2 x17 Gene: cas14:cas14 Type: Type-V Location: 50971-51153 bp Gene: unk Type: unknown Location: 51527-53071 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 53247-53615 bp CRISPR array Location: 112835-113920 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 112835-113920 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 112835-113920 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAACZG010000015.1 Clostridioides difficile strain BI-10 genome assembly, contig: ERS017143SCcontig000015, whole genome shotgun sequence

⇒Summary: seq-len = 100546 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44889-45515 bp 2 Locus 2: 87135-87230 bp Zoom in on locus 1 x10 Zoom in on locus 2 x2 CRISPR array Location: 44889-45515 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 44889-45515 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 87135-87230 bp Num of repeats: 2 Spacers: s10-s10 CRISPR array Location: 87135-87230 bp Num of repeats: 2 Spacers: s10-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 44889-45515 bp]: array | spacers
           [Locus range 87135-87230 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAACZG010000005.1 Clostridioides difficile strain BI-10 genome assembly, contig: ERS017143SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 237568 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 183355-191230 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 183355-184464 bp Gene: pfam01881:cas6 Type: other Location: 184723-185460 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 185465-186940 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 186960-187973 bp Gene: cd09693:cas5 Type: Type-I Location: 187989-188795 bp Gene: cd09641:cas3HD Type: Type-I Location: 188822-191230 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)