CRISPRone

CRISPRone report for GCA_900686855.1_5673_6_4

♦ Seq 1: CAACZH010000005.1 Clostridioides difficile strain M7404 genome assembly, contig: ERS017219SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 236283 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 183336-191211 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 183336-184445 bp Gene: pfam01881:cas6 Type: other Location: 184704-185441 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 185446-186921 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 186941-187954 bp Gene: cd09693:cas5 Type: Type-I Location: 187970-188776 bp Gene: cd09641:cas3HD Type: Type-I Location: 188803-191211 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAACZH010000004.1 Clostridioides difficile strain M7404 genome assembly, contig: ERS017219SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 289158 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 776-1734 bp 2 Locus 2: 210122-210809 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 CRISPR array Location: 776-1734 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 776-1734 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 210122-210809 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 210122-210809 bp Num of repeats: 11 Spacers: s15-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 776-1734 bp]: array | spacers
           [Locus range 210122-210809 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAACZH010000010.1 Clostridioides difficile strain M7404 genome assembly, contig: ERS017219SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 141124 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16590-26899 bp Zoom in on locus 1 x25 Gene: pfam13280:WYL Type: other Location: 16590-17477 bp Gene: pfam01881:cas6 Type: other Location: 17555-18292 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 18298-20175 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 20177-21091 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 21093-21794 bp Gene: COG1203:cas3 Type: Type-I Location: 21805-24126 bp Gene: pfam01930:cas4 Type: Type-I Location: 24141-24692 bp Gene: cd09722:cas1 Type: universal Location: 24695-25675 bp Gene: cd09725:cas2 Type: universal Location: 25678-25944 bp CRISPR array Location: 26128-27746 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 26128-27746 bp Num of repeats: 25 Spacers: s1-s24 Gene: unk Type: unknown Location: 26277-26444 bp Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 26666-26899 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 26128-27746 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAACZH010000017.1 Clostridioides difficile strain M7404 genome assembly, contig: ERS017219SCcontig000017, whole genome shotgun sequence

⇒Summary: seq-len = 99687 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12460-12554 bp 2 Locus 2: 54175-54800 bp Zoom in on locus 1 x2 Zoom in on locus 2 x10 CRISPR array Location: 12460-12554 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 12460-12554 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 54175-54800 bp Num of repeats: 10 Spacers: s2-s10 CRISPR array Location: 54175-54800 bp Num of repeats: 10 Spacers: s2-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12460-12554 bp]: array | spacers
           [Locus range 54175-54800 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAACZH010000001.1 Clostridioides difficile strain M7404 genome assembly, contig: ERS017219SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 407550 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 294199-295022 bp Zoom in on locus 1 x13 CRISPR array Location: 294199-295022 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 294199-295022 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 294199-295022 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAACZH010000002.1 Clostridioides difficile strain M7404 genome assembly, contig: ERS017219SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 380075 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 304007-310540 bp Zoom in on locus 1 x10 Gene: cd09693:cas5 Type: Type-I Location: 304007-304654 bp Gene: pfam01881:cas6 Type: other Location: 304645-305409 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 305411-306577 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 306598-307668 bp Gene: COG1203:cas3 Type: Type-I Location: 307679-309664 bp CRISPR array Location: 309917-310540 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 309917-310540 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 309917-310540 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAACZH010000008.1 Clostridioides difficile strain M7404 genome assembly, contig: ERS017219SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 149001 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23150-25660 bp 2 Locus 2: 118044-118337 bp Zoom in on locus 1 x5 x6 Zoom in on locus 2 x5 CRISPR array Location: 23150-23439 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 23150-23439 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 25304-25660 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 25304-25660 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 118044-118337 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 118044-118337 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23150-23439 bp]: array | spacers
           [Locus range 25304-25660 bp]: array | spacers
           [Locus range 118044-118337 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)