CRISPRone

CRISPRone report for GCA_900687005.1_5673_7_5

♦ Seq 1: CAACZJ010000003.1 Clostridioides difficile strain LSTM35 genome assembly, contig: ERS017267SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 354167 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 299369-299995 bp 2 Locus 2: 341615-341710 bp Zoom in on locus 1 x10 Zoom in on locus 2 x2 CRISPR array Location: 299369-299995 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 299369-299995 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 341615-341710 bp Num of repeats: 2 Spacers: s10-s10 CRISPR array Location: 341615-341710 bp Num of repeats: 2 Spacers: s10-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 299369-299995 bp]: array | spacers
           [Locus range 341615-341710 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAACZJ010000009.1 Clostridioides difficile strain LSTM35 genome assembly, contig: ERS017267SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 149001 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23150-25660 bp 2 Locus 2: 118044-118337 bp Zoom in on locus 1 x5 x6 Zoom in on locus 2 x5 CRISPR array Location: 23150-23439 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 23150-23439 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 25304-25660 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 25304-25660 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 118044-118337 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 118044-118337 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23150-23439 bp]: array | spacers
           [Locus range 25304-25660 bp]: array | spacers
           [Locus range 118044-118337 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAACZJ010000004.1 Clostridioides difficile strain LSTM35 genome assembly, contig: ERS017267SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 319327 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 78287-78973 bp 2 Locus 2: 287362-288319 bp Zoom in on locus 1 x11 Zoom in on locus 2 x15 CRISPR array Location: 78287-78973 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 78287-78973 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 287362-288319 bp Num of repeats: 15 Spacers: s11-s24 CRISPR array Location: 287362-288319 bp Num of repeats: 15 Spacers: s11-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 78287-78973 bp]: array | spacers
           [Locus range 287362-288319 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAACZJ010000011.1 Clostridioides difficile strain LSTM35 genome assembly, contig: ERS017267SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 140933 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16419-26728 bp Zoom in on locus 1 x25 Gene: pfam13280:WYL Type: other Location: 16419-17306 bp Gene: pfam01881:cas6 Type: other Location: 17384-18121 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 18127-20004 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 20006-20920 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 20922-21623 bp Gene: COG1203:cas3 Type: Type-I Location: 21634-23955 bp Gene: pfam01930:cas4 Type: Type-I Location: 23970-24521 bp Gene: cd09722:cas1 Type: universal Location: 24524-25504 bp Gene: cd09725:cas2 Type: universal Location: 25507-25773 bp CRISPR array Location: 25957-27575 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 25957-27575 bp Num of repeats: 25 Spacers: s1-s24 Gene: unk Type: unknown Location: 26106-26273 bp Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 26495-26728 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 25957-27575 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAACZJ010000002.1 Clostridioides difficile strain LSTM35 genome assembly, contig: ERS017267SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 366387 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 69148-75680 bp Zoom in on locus 1 x10 CRISPR array Location: 69148-69770 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 69148-69770 bp Num of repeats: 10 Spacers: s1-s9 Gene: COG1203:cas3 Type: Type-I Location: 70023-72008 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 72019-73089 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 73110-74276 bp Gene: pfam01881:cas6 Type: other Location: 74278-75042 bp Gene: cd09693:cas5 Type: Type-I Location: 75033-75680 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 69148-69770 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAACZJ010000001.1 Clostridioides difficile strain LSTM35 genome assembly, contig: ERS017267SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 394503 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 112283-113107 bp Zoom in on locus 1 x13 CRISPR array Location: 112283-113107 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 112283-113107 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 112283-113107 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAACZJ010000005.1 Clostridioides difficile strain LSTM35 genome assembly, contig: ERS017267SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 236279 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 183335-191210 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 183335-184444 bp Gene: pfam01881:cas6 Type: other Location: 184703-185440 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 185445-186920 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 186940-187953 bp Gene: cd09693:cas5 Type: Type-I Location: 187969-188775 bp Gene: cd09641:cas3HD Type: Type-I Location: 188802-191210 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)