CRISPRone

CRISPRone report for GCA_900687115.1_5789_3_4

♦ Seq 1: CAACZP010000004.1 Clostridioides difficile strain Liv150 genome assembly, contig: ERS017161SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 319284 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 78244-78930 bp 2 Locus 2: 287319-288276 bp Zoom in on locus 1 x11 Zoom in on locus 2 x15 CRISPR array Location: 78244-78930 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 78244-78930 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 287319-288276 bp Num of repeats: 15 Spacers: s11-s24 CRISPR array Location: 287319-288276 bp Num of repeats: 15 Spacers: s11-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 78244-78930 bp]: array | spacers
           [Locus range 287319-288276 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAACZP010000003.1 Clostridioides difficile strain Liv150 genome assembly, contig: ERS017161SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 354609 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 300394-301020 bp 2 Locus 2: 342640-342735 bp Zoom in on locus 1 x10 Zoom in on locus 2 x2 CRISPR array Location: 300394-301020 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 300394-301020 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 342640-342735 bp Num of repeats: 2 Spacers: s10-s10 CRISPR array Location: 342640-342735 bp Num of repeats: 2 Spacers: s10-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 300394-301020 bp]: array | spacers
           [Locus range 342640-342735 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAACZP010000009.1 Clostridioides difficile strain Liv150 genome assembly, contig: ERS017161SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 149001 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30665-30959 bp 2 Locus 2: 123342-125853 bp Zoom in on locus 1 x5 Zoom in on locus 2 x6 x5 CRISPR array Location: 30665-30959 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 30665-30959 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 123342-123699 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 123342-123699 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 125563-125853 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 125563-125853 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 30665-30959 bp]: array | spacers
           [Locus range 123342-123699 bp]: array | spacers
           [Locus range 125563-125853 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAACZP010000002.1 Clostridioides difficile strain Liv150 genome assembly, contig: ERS017161SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 380077 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 304009-310542 bp Zoom in on locus 1 x10 Gene: cd09693:cas5 Type: Type-I Location: 304009-304656 bp Gene: pfam01881:cas6 Type: other Location: 304647-305411 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 305413-306579 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 306600-307670 bp Gene: COG1203:cas3 Type: Type-I Location: 307681-309666 bp CRISPR array Location: 309919-310542 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 309919-310542 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 309919-310542 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAACZP010000001.1 Clostridioides difficile strain Liv150 genome assembly, contig: ERS017161SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 406908 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 293768-294591 bp Zoom in on locus 1 x13 CRISPR array Location: 293768-294591 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 293768-294591 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 293768-294591 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAACZP010000005.1 Clostridioides difficile strain Liv150 genome assembly, contig: ERS017161SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 236285 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45075-52950 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 45075-47483 bp Gene: cd09693:cas5 Type: Type-I Location: 47510-48316 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 48332-49345 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 49365-50840 bp Gene: pfam01881:cas6 Type: other Location: 50845-51582 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 51841-52950 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAACZP010000011.1 Clostridioides difficile strain Liv150 genome assembly, contig: ERS017161SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 140933 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113360-124542 bp Zoom in on locus 1 x25 CRISPR array Location: 113360-114977 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 113360-114977 bp Num of repeats: 25 Spacers: s1-s24 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 114206-114439 bp Gene: unk Type: unknown Location: 114661-114828 bp Gene: cd09725:cas2 Type: universal Location: 115161-115427 bp Gene: cd09722:cas1 Type: universal Location: 115430-116410 bp Gene: pfam01930:cas4 Type: Type-I Location: 116413-116931 bp Gene: COG1203:cas3 Type: Type-I Location: 116979-119300 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 119311-120012 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 120014-120928 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 120930-122807 bp Gene: pfam01881:cas6 Type: other Location: 122813-123607 bp Gene: pfam13280:WYL Type: other Location: 123628-124542 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 113360-114977 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)