CRISPRone

CRISPRone report for GCA_900687235.1_6437_3_19

♦ Seq 1: CAACZL010000008.1 Clostridioides difficile strain Lei019 genome assembly, contig: ERS032944SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 149000 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30664-30958 bp 2 Locus 2: 123341-125852 bp Zoom in on locus 1 x5 Zoom in on locus 2 x6 x5 CRISPR array Location: 30664-30958 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 30664-30958 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 123341-123698 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 123341-123698 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 125562-125852 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 125562-125852 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 30664-30958 bp]: array | spacers
           [Locus range 123341-123698 bp]: array | spacers
           [Locus range 125562-125852 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAACZL010000006.1 Clostridioides difficile strain Lei019 genome assembly, contig: ERS032944SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 236291 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 183336-191211 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 183336-184445 bp Gene: pfam01881:cas6 Type: other Location: 184704-185441 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 185446-186921 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 186941-187954 bp Gene: cd09693:cas5 Type: Type-I Location: 187970-188776 bp Gene: cd09641:cas3HD Type: Type-I Location: 188803-191211 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAACZL010000003.1 Clostridioides difficile strain Lei019 genome assembly, contig: ERS032944SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 309217 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 196098-196921 bp Zoom in on locus 1 x13 CRISPR array Location: 196098-196921 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 196098-196921 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 196098-196921 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAACZL010000001.1 Clostridioides difficile strain Lei019 genome assembly, contig: ERS032944SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 371512 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 295833-302366 bp Zoom in on locus 1 x10 Gene: cd09693:cas5 Type: Type-I Location: 295833-296480 bp Gene: pfam01881:cas6 Type: other Location: 296471-297235 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 297237-298403 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 298424-299494 bp Gene: COG1203:cas3 Type: Type-I Location: 299505-301490 bp CRISPR array Location: 301743-302366 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 301743-302366 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 301743-302366 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAACZL010000011.1 Clostridioides difficile strain Lei019 genome assembly, contig: ERS032944SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 141103 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113530-124712 bp Zoom in on locus 1 x25 CRISPR array Location: 113530-115147 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 113530-115147 bp Num of repeats: 25 Spacers: s1-s24 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 114376-114609 bp Gene: unk Type: unknown Location: 114831-114998 bp Gene: cd09725:cas2 Type: universal Location: 115331-115597 bp Gene: cd09722:cas1 Type: universal Location: 115600-116580 bp Gene: pfam01930:cas4 Type: Type-I Location: 116583-117101 bp Gene: COG1203:cas3 Type: Type-I Location: 117149-119470 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 119481-120182 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 120184-121098 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 121100-122977 bp Gene: pfam01881:cas6 Type: other Location: 122983-123777 bp Gene: pfam13280:WYL Type: other Location: 123798-124712 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 113530-115147 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAACZL010000004.1 Clostridioides difficile strain Lei019 genome assembly, contig: ERS032944SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 289068 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 791-1749 bp 2 Locus 2: 210136-210823 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 CRISPR array Location: 791-1749 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 791-1749 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 210136-210823 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 210136-210823 bp Num of repeats: 11 Spacers: s15-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 791-1749 bp]: array | spacers
           [Locus range 210136-210823 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAACZL010000017.1 Clostridioides difficile strain Lei019 genome assembly, contig: ERS032944SCcontig000017, whole genome shotgun sequence

⇒Summary: seq-len = 98920 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44706-45332 bp 2 Locus 2: 86952-87047 bp Zoom in on locus 1 x10 Zoom in on locus 2 x2 CRISPR array Location: 44706-45332 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 44706-45332 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 86952-87047 bp Num of repeats: 2 Spacers: s10-s10 CRISPR array Location: 86952-87047 bp Num of repeats: 2 Spacers: s10-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 44706-45332 bp]: array | spacers
           [Locus range 86952-87047 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)