CRISPRone

CRISPRone report for GCA_900687285.1_6437_3_15

♦ Seq 1: CAACZM010000013.1 Clostridioides difficile strain Lei015 genome assembly, contig: ERS032940SCcontig000013, whole genome shotgun sequence

⇒Summary: seq-len = 126479 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 49366-55899 bp Zoom in on locus 1 x10 Gene: cd09693:cas5 Type: Type-I Location: 49366-50013 bp Gene: pfam01881:cas6 Type: other Location: 50004-50768 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 50770-51936 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 51957-53027 bp Gene: COG1203:cas3 Type: Type-I Location: 53038-55023 bp CRISPR array Location: 55276-55899 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 55276-55899 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 55276-55899 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAACZM010000004.1 Clostridioides difficile strain Lei015 genome assembly, contig: ERS032940SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 289207 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 78246-78932 bp 2 Locus 2: 287321-288278 bp Zoom in on locus 1 x11 Zoom in on locus 2 x15 CRISPR array Location: 78246-78932 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 78246-78932 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 287321-288278 bp Num of repeats: 15 Spacers: s11-s24 CRISPR array Location: 287321-288278 bp Num of repeats: 15 Spacers: s11-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 78246-78932 bp]: array | spacers
           [Locus range 287321-288278 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAACZM010000009.1 Clostridioides difficile strain Lei015 genome assembly, contig: ERS032940SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 149000 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23150-25660 bp 2 Locus 2: 118044-118337 bp Zoom in on locus 1 x5 x6 Zoom in on locus 2 x5 CRISPR array Location: 23150-23439 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 23150-23439 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 25304-25660 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 25304-25660 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 118044-118337 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 118044-118337 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23150-23439 bp]: array | spacers
           [Locus range 25304-25660 bp]: array | spacers
           [Locus range 118044-118337 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAACZM010000002.1 Clostridioides difficile strain Lei015 genome assembly, contig: ERS032940SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 353596 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11876-11970 bp 2 Locus 2: 53591-54216 bp Zoom in on locus 1 x2 Zoom in on locus 2 x10 CRISPR array Location: 11876-11970 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 11876-11970 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 53591-54216 bp Num of repeats: 10 Spacers: s2-s10 CRISPR array Location: 53591-54216 bp Num of repeats: 10 Spacers: s2-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11876-11970 bp]: array | spacers
           [Locus range 53591-54216 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAACZM010000001.1 Clostridioides difficile strain Lei015 genome assembly, contig: ERS032940SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 372151 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 183428-191303 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 183428-184537 bp Gene: pfam01881:cas6 Type: other Location: 184796-185533 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 185538-187013 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 187033-188046 bp Gene: cd09693:cas5 Type: Type-I Location: 188062-188868 bp Gene: cd09641:cas3HD Type: Type-I Location: 188895-191303 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAACZM010000011.1 Clostridioides difficile strain Lei015 genome assembly, contig: ERS032940SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 141686 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17002-27311 bp Zoom in on locus 1 x25 Gene: pfam13280:WYL Type: other Location: 17002-17889 bp Gene: pfam01881:cas6 Type: other Location: 17967-18704 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 18710-20587 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 20589-21503 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 21505-22206 bp Gene: COG1203:cas3 Type: Type-I Location: 22217-24538 bp Gene: pfam01930:cas4 Type: Type-I Location: 24553-25104 bp Gene: cd09722:cas1 Type: universal Location: 25107-26087 bp Gene: cd09725:cas2 Type: universal Location: 26090-26356 bp CRISPR array Location: 26540-28158 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 26540-28158 bp Num of repeats: 25 Spacers: s1-s24 Gene: unk Type: unknown Location: 26689-26856 bp Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 27078-27311 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 26540-28158 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAACZM010000003.1 Clostridioides difficile strain Lei015 genome assembly, contig: ERS032940SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 309244 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 196111-196934 bp Zoom in on locus 1 x13 CRISPR array Location: 196111-196934 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 196111-196934 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 196111-196934 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)