CRISPRone

CRISPRone report for GCA_900687405.1_6437_4_10

♦ Seq 1: CAACZO010000003.1 Clostridioides difficile strain Lei034 genome assembly, contig: ERS032959SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 276858 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 248936-260378 bp Zoom in on locus 1 x29 CRISPR array Location: 248936-250813 bp Num of repeats: 29 Spacers: s1-s28 CRISPR array Location: 248936-250813 bp Num of repeats: 29 Spacers: s1-s28 Gene: cd09725:cas2 Type: universal Location: 250997-251263 bp Gene: cd09722:cas1 Type: universal Location: 251266-252246 bp Gene: pfam01930:cas4 Type: Type-I Location: 252249-252767 bp Gene: COG1203:cas3 Type: Type-I Location: 252815-255136 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 255147-255848 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 255850-256764 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 256766-258643 bp Gene: pfam01881:cas6 Type: other Location: 258649-259443 bp Gene: pfam13280:WYL Type: other Location: 259464-260378 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 248936-250813 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAACZO010000002.1 Clostridioides difficile strain Lei034 genome assembly, contig: ERS032959SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 292143 bp; # of CRISPR array = 7; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44661-45684 bp 2 Locus 2: 63756-64508 bp 3 Locus 3: 99075-105173 bp 4 Locus 4: 147383-147545 bp Zoom in on locus 1 x16 Zoom in on locus 2 x12 Zoom in on locus 3 x6 x4 x3 x8 Zoom in on locus 4 x3 CRISPR array Location: 44661-45684 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 44661-45684 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 63756-64508 bp Num of repeats: 12 Spacers: s16-s26 CRISPR array Location: 63756-64508 bp Num of repeats: 12 Spacers: s16-s26 CRISPR array Location: 99075-99432 bp Num of repeats: 6 Spacers: s27-s31 CRISPR array Location: 99075-99432 bp Num of repeats: 6 Spacers: s27-s31 CRISPR array Location: 102265-102491 bp Num of repeats: 4 Spacers: s32-s34 CRISPR array Location: 102265-102491 bp Num of repeats: 4 Spacers: s32-s34 CRISPR array Location: 102725-102886 bp Num of repeats: 3 Spacers: s35-s36 CRISPR array Location: 102725-102886 bp Num of repeats: 3 Spacers: s35-s36 CRISPR array Location: 104685-105173 bp Num of repeats: 8 Spacers: s37-s43 CRISPR array Location: 104685-105173 bp Num of repeats: 8 Spacers: s37-s43 CRISPR array Location: 147383-147545 bp Num of repeats: 3 Spacers: s44-s45 CRISPR array Location: 147383-147545 bp Num of repeats: 3 Spacers: s44-s45 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 44661-45684 bp]: array | spacers
           [Locus range 63756-64508 bp]: array | spacers
           [Locus range 99075-99432 bp]: array | spacers
           [Locus range 102265-102491 bp]: array | spacers
           [Locus range 102725-102886 bp]: array | spacers
           [Locus range 104685-105173 bp]: array | spacers
           [Locus range 147383-147545 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAACZO010000005.1 Clostridioides difficile strain Lei034 genome assembly, contig: ERS032959SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 253739 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 148784-149205 bp Zoom in on locus 1 x7 CRISPR array Location: 148784-149205 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 148784-149205 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 148784-149205 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAACZO010000004.1 Clostridioides difficile strain Lei034 genome assembly, contig: ERS032959SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 275393 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113384-121259 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 113384-114493 bp Gene: pfam01881:cas6 Type: other Location: 114752-115489 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 115494-116969 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 116989-118002 bp Gene: cd09693:cas5 Type: Type-I Location: 118018-118824 bp Gene: cd09641:cas3HD Type: Type-I Location: 118851-121259 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAACZO010000011.1 Clostridioides difficile strain Lei034 genome assembly, contig: ERS032959SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 137717 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 24602-24826 bp 2 Locus 2: 106353-107044 bp Zoom in on locus 1 x4 Zoom in on locus 2 x11 CRISPR array Location: 24602-24826 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 24602-24826 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 106353-107044 bp Num of repeats: 11 Spacers: s4-s13 CRISPR array Location: 106353-107044 bp Num of repeats: 11 Spacers: s4-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 24602-24826 bp]: array | spacers
           [Locus range 106353-107044 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAACZO010000001.1 Clostridioides difficile strain Lei034 genome assembly, contig: ERS032959SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 463130 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 80454-80547 bp 2 Locus 2: 288722-289214 bp Zoom in on locus 1 x2 Zoom in on locus 2 x8 CRISPR array Location: 80454-80547 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 80454-80547 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 288722-289214 bp Num of repeats: 8 Spacers: s2-s8 CRISPR array Location: 288722-289214 bp Num of repeats: 8 Spacers: s2-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 80454-80547 bp]: array | spacers
           [Locus range 288722-289214 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)