CRISPRone

CRISPRone report for GCA_900687475.1_6437_4_4

♦ Seq 1: CAACZQ010000017.1 Clostridioides difficile strain Lei028 genome assembly, contig: ERS032953SCcontig000017, whole genome shotgun sequence

⇒Summary: seq-len = 99130 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11895-11989 bp 2 Locus 2: 53610-54235 bp Zoom in on locus 1 x2 Zoom in on locus 2 x10 CRISPR array Location: 11895-11989 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 11895-11989 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 53610-54235 bp Num of repeats: 10 Spacers: s2-s10 CRISPR array Location: 53610-54235 bp Num of repeats: 10 Spacers: s2-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11895-11989 bp]: array | spacers
           [Locus range 53610-54235 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAACZQ010000001.1 Clostridioides difficile strain Lei028 genome assembly, contig: ERS032953SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 407597 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 294247-295070 bp Zoom in on locus 1 x13 CRISPR array Location: 294247-295070 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 294247-295070 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 294247-295070 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAACZQ010000008.1 Clostridioides difficile strain Lei028 genome assembly, contig: ERS032953SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 149039 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23170-25680 bp 2 Locus 2: 118064-118357 bp Zoom in on locus 1 x5 x6 Zoom in on locus 2 x5 CRISPR array Location: 23170-23459 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 23170-23459 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 25324-25680 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 25324-25680 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 118064-118357 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 118064-118357 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23170-23459 bp]: array | spacers
           [Locus range 25324-25680 bp]: array | spacers
           [Locus range 118064-118357 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAACZQ010000010.1 Clostridioides difficile strain Lei028 genome assembly, contig: ERS032953SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 141213 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16529-26838 bp Zoom in on locus 1 x25 Gene: pfam13280:WYL Type: other Location: 16529-17416 bp Gene: pfam01881:cas6 Type: other Location: 17494-18231 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 18237-20114 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 20116-21030 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 21032-21733 bp Gene: COG1203:cas3 Type: Type-I Location: 21744-24065 bp Gene: pfam01930:cas4 Type: Type-I Location: 24080-24631 bp Gene: cd09722:cas1 Type: universal Location: 24634-25614 bp Gene: cd09725:cas2 Type: universal Location: 25617-25883 bp CRISPR array Location: 26067-27685 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 26067-27685 bp Num of repeats: 25 Spacers: s1-s24 Gene: unk Type: unknown Location: 26216-26383 bp Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 26605-26838 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 26067-27685 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAACZQ010000004.1 Clostridioides difficile strain Lei028 genome assembly, contig: ERS032953SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 289984 bp; # of CRISPR array = 2; # of cas gene = 3  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-3217 bp 2 Locus 2: 79165-79851 bp 3 Locus 3: 288240-289197 bp Zoom in on locus 1 Zoom in on locus 2 x11 Zoom in on locus 3 x15 Gene: cas14:cas14 Type: Type-V Location: 3-359 bp Gene: COG2378:WYL Type: other Location: 961-1872 bp Gene: unk Type: unknown Location: 1983-2450 bp Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 2618-3217 bp CRISPR array Location: 79165-79851 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 79165-79851 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 288240-289197 bp Num of repeats: 15 Spacers: s11-s24 CRISPR array Location: 288240-289197 bp Num of repeats: 15 Spacers: s11-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 79165-79851 bp]: array | spacers
           [Locus range 288240-289197 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAACZQ010000002.1 Clostridioides difficile strain Lei028 genome assembly, contig: ERS032953SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 379761 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 304063-310596 bp Zoom in on locus 1 x10 Gene: cd09693:cas5 Type: Type-I Location: 304063-304710 bp Gene: pfam01881:cas6 Type: other Location: 304701-305465 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 305467-306633 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 306654-307724 bp Gene: COG1203:cas3 Type: Type-I Location: 307735-309720 bp CRISPR array Location: 309973-310596 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 309973-310596 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 309973-310596 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAACZQ010000005.1 Clostridioides difficile strain Lei028 genome assembly, contig: ERS032953SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 236310 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 183355-191230 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 183355-184464 bp Gene: pfam01881:cas6 Type: other Location: 184723-185460 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 185465-186940 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 186960-187973 bp Gene: cd09693:cas5 Type: Type-I Location: 187989-188795 bp Gene: cd09641:cas3HD Type: Type-I Location: 188822-191230 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)