CRISPRone

CRISPRone report for GCA_900687565.1_7614_4_51

♦ Seq 1: CAACZR010000007.1 Clostridioides difficile strain lsh14 genome assembly, contig: ERS080218SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 210630 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90909-91397 bp Zoom in on locus 1 x8 CRISPR array Location: 90909-91397 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 90909-91397 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90909-91397 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAACZR010000004.1 Clostridioides difficile strain lsh14 genome assembly, contig: ERS080218SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 344760 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252695-252989 bp 2 Locus 2: 298649-299990 bp Zoom in on locus 1 x5 Zoom in on locus 2 x21 CRISPR array Location: 252695-252989 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 252695-252989 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 298649-299990 bp Num of repeats: 21 Spacers: s5-s24 CRISPR array Location: 298649-299990 bp Num of repeats: 21 Spacers: s5-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 252695-252989 bp]: array | spacers
           [Locus range 298649-299990 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAACZR010000002.1 Clostridioides difficile strain lsh14 genome assembly, contig: ERS080218SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 635667 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 372560-383437 bp Zoom in on locus 1 x21 Gene: pfam13280:WYL Type: other Location: 372560-373474 bp Gene: pfam01881:cas6 Type: other Location: 373495-374289 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 374295-376145 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 376147-377061 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 377063-377764 bp Gene: COG1203:cas3 Type: Type-I Location: 377775-380096 bp Gene: pfam01930:cas4 Type: Type-I Location: 380111-380662 bp Gene: cd09722:cas1 Type: universal Location: 380665-381645 bp Gene: cd09725:cas2 Type: universal Location: 381648-381914 bp CRISPR array Location: 382098-383437 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 382098-383437 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 382098-383437 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAACZR010000013.1 Clostridioides difficile strain lsh14 genome assembly, contig: ERS080218SCcontig000013, whole genome shotgun sequence

⇒Summary: seq-len = 117474 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 98624-99376 bp Zoom in on locus 1 x12 CRISPR array Location: 98624-99376 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 98624-99376 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 98624-99376 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAACZR010000005.1 Clostridioides difficile strain lsh14 genome assembly, contig: ERS080218SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 277511 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 86948-87110 bp Zoom in on locus 1 x3 CRISPR array Location: 86948-87110 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 86948-87110 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 86948-87110 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAACZR010000009.1 Clostridioides difficile strain lsh14 genome assembly, contig: ERS080218SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 186693 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 128675-130091 bp Zoom in on locus 1 x22 CRISPR array Location: 128675-130091 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 128675-130091 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 128675-130091 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAACZR010000001.1 Clostridioides difficile strain lsh14 genome assembly, contig: ERS080218SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 747210 bp; # of CRISPR array = 2; # of cas gene = 5  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244489-244584 bp 2 Locus 2: 317864-325729 bp 3 Locus 3: 488183-488675 bp Zoom in on locus 1 x2 Zoom in on locus 2 Zoom in on locus 3 x8 CRISPR array Location: 244489-244584 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 244489-244584 bp Num of repeats: 2 Spacers: s1-s1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 317864-318973 bp Gene: pfam01881:cas6 Type: other Location: 319231-319968 bp Gene: unk Type: unknown Location: 319973-321448 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 321468-322481 bp Gene: cd09693:cas5 Type: Type-I Location: 322497-323294 bp Gene: cd09641:cas3HD Type: Type-I Location: 323321-325729 bp CRISPR array Location: 488183-488675 bp Num of repeats: 8 Spacers: s2-s8 CRISPR array Location: 488183-488675 bp Num of repeats: 8 Spacers: s2-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244489-244584 bp]: array | spacers
           [Locus range 488183-488675 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)