CRISPRone

CRISPRone report for GCA_900687575.1_7614_4_57

♦ Seq 1: CAADAD010000007.1 Clostridioides difficile strain lsh21 genome assembly, contig: ERS080224SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 258256 bp; # of CRISPR array = 2; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63661-64679 bp 2 Locus 2: 123178-126045 bp 3 Locus 3: 239085-240102 bp Zoom in on locus 1 x16 Zoom in on locus 2 Zoom in on locus 3 x16 CRISPR array Location: 63661-64679 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 63661-64679 bp Num of repeats: 16 Spacers: s1-s15 Gene: COG0640:csa3 Type: Subtype-I-A Location: 123178-123546 bp Gene: unk Type: unknown Location: 123722-125245 bp Gene: cls000707:cas10 Type: Type-III Location: 125581-126045 bp CRISPR array Location: 239085-240102 bp Num of repeats: 16 Spacers: s16-s30 CRISPR array Location: 239085-240102 bp Num of repeats: 16 Spacers: s16-s30 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 63661-64679 bp]: array | spacers
           [Locus range 239085-240102 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADAD010000001.1 Clostridioides difficile strain lsh21 genome assembly, contig: ERS080224SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 548187 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45473-45765 bp 2 Locus 2: 119044-127378 bp 3 Locus 3: 289908-290334 bp Zoom in on locus 1 x5 Zoom in on locus 2 Zoom in on locus 3 x7 CRISPR array Location: 45473-45765 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 45473-45765 bp Num of repeats: 5 Spacers: s1-s4 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 119044-120153 bp Gene: unk Type: unknown Location: 120612-120788 bp Gene: pfam01881:cas6 Type: other Location: 120889-121626 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 121631-123097 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 123117-124130 bp Gene: cd09693:cas5 Type: Type-I Location: 124146-124943 bp Gene: cd09641:cas3HD Type: Type-I Location: 124970-127378 bp CRISPR array Location: 289908-290334 bp Num of repeats: 7 Spacers: s5-s10 CRISPR array Location: 289908-290334 bp Num of repeats: 7 Spacers: s5-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 45473-45765 bp]: array | spacers
           [Locus range 289908-290334 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADAD010000004.1 Clostridioides difficile strain lsh21 genome assembly, contig: ERS080224SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 289469 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 117756-117916 bp Zoom in on locus 1 x3 CRISPR array Location: 117756-117916 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 117756-117916 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 117756-117916 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADAD010000003.1 Clostridioides difficile strain lsh21 genome assembly, contig: ERS080224SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 350358 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 102479-102641 bp Zoom in on locus 1 x3 CRISPR array Location: 102479-102641 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 102479-102641 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 102479-102641 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADAD010000005.1 Clostridioides difficile strain lsh21 genome assembly, contig: ERS080224SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 280266 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91463-91687 bp Zoom in on locus 1 x4 CRISPR array Location: 91463-91687 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 91463-91687 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91463-91687 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADAD010000009.1 Clostridioides difficile strain lsh21 genome assembly, contig: ERS080224SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 213095 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90941-91432 bp Zoom in on locus 1 x8 CRISPR array Location: 90941-91432 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 90941-91432 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90941-91432 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)