CRISPRone

CRISPRone report for GCA_900687605.1_7614_4_59

♦ Seq 1: CAACZT010000004.1 Clostridioides difficile strain lsh23 genome assembly, contig: ERS080226SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 326055 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 117373-119113 bp Zoom in on locus 1 x27 CRISPR array Location: 117373-119113 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 117373-119113 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 117373-119113 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAACZT010000010.1 Clostridioides difficile strain lsh23 genome assembly, contig: ERS080226SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 228839 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37467-39441 bp 2 Locus 2: 128965-129393 bp Zoom in on locus 1 x13 x9 Zoom in on locus 2 x7 CRISPR array Location: 37467-38284 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 37467-38284 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 38887-39441 bp Num of repeats: 9 Spacers: s13-s20 CRISPR array Location: 38887-39441 bp Num of repeats: 9 Spacers: s13-s20 CRISPR array Location: 128965-129393 bp Num of repeats: 7 Spacers: s21-s26 CRISPR array Location: 128965-129393 bp Num of repeats: 7 Spacers: s21-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 37467-38284 bp]: array | spacers
           [Locus range 38887-39441 bp]: array | spacers
           [Locus range 128965-129393 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAACZT010000003.1 Clostridioides difficile strain lsh23 genome assembly, contig: ERS080226SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 411484 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190294-190721 bp 2 Locus 2: 394255-394677 bp Zoom in on locus 1 x7 Zoom in on locus 2 x7 CRISPR array Location: 190294-190721 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 190294-190721 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 394255-394677 bp Num of repeats: 7 Spacers: s7-s12 CRISPR array Location: 394255-394677 bp Num of repeats: 7 Spacers: s7-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 190294-190721 bp]: array | spacers
           [Locus range 394255-394677 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAACZT010000001.1 Clostridioides difficile strain lsh23 genome assembly, contig: ERS080226SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 739111 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 240373-240930 bp 2 Locus 2: 315150-323015 bp 3 Locus 3: 488772-488999 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x4 CRISPR array Location: 240373-240930 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 240373-240930 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 315150-316259 bp Gene: pfam01881:cas6 Type: other Location: 316517-317254 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 317259-318734 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 318754-319767 bp Gene: cd09693:cas5 Type: Type-I Location: 319783-320580 bp Gene: cd09641:cas3HD Type: Type-I Location: 320607-323015 bp CRISPR array Location: 488772-488999 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 488772-488999 bp Num of repeats: 4 Spacers: s9-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 240373-240930 bp]: array | spacers
           [Locus range 488772-488999 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAACZT010000002.1 Clostridioides difficile strain lsh23 genome assembly, contig: ERS080226SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 461506 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 43919-44013 bp Zoom in on locus 1 x2 CRISPR array Location: 43919-44013 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 43919-44013 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 43919-44013 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAACZT010000009.1 Clostridioides difficile strain lsh23 genome assembly, contig: ERS080226SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 230418 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 89722-89948 bp Zoom in on locus 1 x4 CRISPR array Location: 89722-89948 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 89722-89948 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 89722-89948 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)