CRISPRone

CRISPRone report for GCA_900687625.1_7614_4_62

♦ Seq 1: CAACZU010000001.1 Clostridioides difficile strain lsh26 genome assembly, contig: ERS080229SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 377844 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 189957-190050 bp Zoom in on locus 1 x2 CRISPR array Location: 189957-190050 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 189957-190050 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 189957-190050 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAACZU010000004.1 Clostridioides difficile strain lsh26 genome assembly, contig: ERS080229SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 300268 bp; # of CRISPR array = 1; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 95592-106545 bp 2 Locus 2: 159157-167022 bp 3 Locus 3: 259689-259917 bp Zoom in on locus 1 Zoom in on locus 2 Zoom in on locus 3 x4 Gene: cd06127:DEDDh Type: Type-I Location: 95592-96098 bp Gene: unk Type: unknown Location: 96257-96925 bp Gene: unk Type: unknown Location: 97338-97844 bp Gene: cd06127:DEDDh Type: Type-I Location: 98208-99245 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 106060-106545 bp Gene: cd09641:cas3HD Type: Type-I Location: 159157-161565 bp Gene: cd09693:cas5 Type: Type-I Location: 161592-162389 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 162405-163418 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 163437-164912 bp Gene: pfam01881:cas6 Type: other Location: 164917-165654 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 165913-167022 bp CRISPR array Location: 259689-259917 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 259689-259917 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 259689-259917 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAACZU010000003.1 Clostridioides difficile strain lsh26 genome assembly, contig: ERS080229SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 311840 bp; # of CRISPR array = 2; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44483-45300 bp 2 Locus 2: 82807-92990 bp Zoom in on locus 1 x13 Zoom in on locus 2 x12 CRISPR array Location: 44483-45300 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 44483-45300 bp Num of repeats: 13 Spacers: s1-s12 Gene: COG0640:csa3 Type: Subtype-I-A Location: 82807-83184 bp Gene: cd09718:cas1 Type: universal Location: 83196-84851 bp CRISPR array Location: 92235-92990 bp Num of repeats: 12 Spacers: s13-s23 CRISPR array Location: 92235-92990 bp Num of repeats: 12 Spacers: s13-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44483-45300 bp]: array | spacers
           [Locus range 92235-92990 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAACZU010000002.1 Clostridioides difficile strain lsh26 genome assembly, contig: ERS080229SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 332871 bp; # of CRISPR array = 6; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 73388-74137 bp 2 Locus 2: 139544-141421 bp 3 Locus 3: 247783-251053 bp 4 Locus 4: 286772-287654 bp Zoom in on locus 1 x12 Zoom in on locus 2 x2 x4 Zoom in on locus 3 x9 x4 Zoom in on locus 4 x14 CRISPR array Location: 73388-74137 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 73388-74137 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 139544-139637 bp Num of repeats: 2 Spacers: s12-s12 CRISPR array Location: 139544-139637 bp Num of repeats: 2 Spacers: s12-s12 CRISPR array Location: 141196-141421 bp Num of repeats: 4 Spacers: s13-s15 CRISPR array Location: 141196-141421 bp Num of repeats: 4 Spacers: s13-s15 CRISPR array Location: 247783-248335 bp Num of repeats: 9 Spacers: s16-s23 CRISPR array Location: 247783-248335 bp Num of repeats: 9 Spacers: s16-s23 CRISPR array Location: 250829-251053 bp Num of repeats: 4 Spacers: s24-s26 CRISPR array Location: 250829-251053 bp Num of repeats: 4 Spacers: s24-s26 CRISPR array Location: 286772-287654 bp Num of repeats: 14 Spacers: s27-s39 CRISPR array Location: 286772-287654 bp Num of repeats: 14 Spacers: s27-s39 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 73388-74137 bp]: array | spacers
           [Locus range 139544-139637 bp]: array | spacers
           [Locus range 141196-141421 bp]: array | spacers
           [Locus range 247783-248335 bp]: array | spacers
           [Locus range 250829-251053 bp]: array | spacers
           [Locus range 286772-287654 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)