CRISPRone

CRISPRone report for GCA_900687645.1_7614_4_67

♦ Seq 1: CAACZX010000004.1 Clostridioides difficile strain lsh31 genome assembly, contig: ERS080234SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 300999 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63646-64980 bp 2 Locus 2: 200085-200374 bp 3 Locus 3: 280986-282794 bp Zoom in on locus 1 x21 Zoom in on locus 2 x5 Zoom in on locus 3 x28 CRISPR array Location: 63646-64980 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 63646-64980 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 200085-200374 bp Num of repeats: 5 Spacers: s21-s24 CRISPR array Location: 200085-200374 bp Num of repeats: 5 Spacers: s21-s24 CRISPR array Location: 280986-282794 bp Num of repeats: 28 Spacers: s25-s51 CRISPR array Location: 280986-282794 bp Num of repeats: 28 Spacers: s25-s51 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63646-64980 bp]: array | spacers
           [Locus range 200085-200374 bp]: array | spacers
           [Locus range 280986-282794 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAACZX010000001.1 Clostridioides difficile strain lsh31 genome assembly, contig: ERS080234SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 482060 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 160374-168720 bp 2 Locus 2: 242003-242498 bp Zoom in on locus 1 Zoom in on locus 2 x8 Gene: cd09641:cas3HD Type: Type-I Location: 160374-162782 bp Gene: cd09693:cas5 Type: Type-I Location: 162809-163606 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 163622-164638 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 164658-166133 bp Gene: pfam01881:cas6 Type: other Location: 166138-166875 bp Gene: unk Type: unknown Location: 166976-167152 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 167611-168720 bp CRISPR array Location: 242003-242498 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 242003-242498 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 242003-242498 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAACZX010000002.1 Clostridioides difficile strain lsh31 genome assembly, contig: ERS080234SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 390710 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 189631-199553 bp Zoom in on locus 1 x6 CRISPR array Location: 189631-189988 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 189631-189988 bp Num of repeats: 6 Spacers: s1-s5 Gene: cd09725:cas2 Type: universal Location: 190172-190438 bp Gene: cd09722:cas1 Type: universal Location: 190441-191421 bp Gene: pfam01930:cas4 Type: Type-I Location: 191424-191942 bp Gene: cd09641:cas3HD Type: Type-I Location: 191990-194311 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 194322-195023 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 195025-195939 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 195941-197818 bp Gene: pfam01881:cas6 Type: other Location: 197824-198618 bp Gene: pfam13280:WYL Type: other Location: 198639-199553 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 189631-189988 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAACZX010000003.1 Clostridioides difficile strain lsh31 genome assembly, contig: ERS080234SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 368739 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 254039-254329 bp Zoom in on locus 1 x5 CRISPR array Location: 254039-254329 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 254039-254329 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 254039-254329 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAACZX010000036.1 Clostridioides difficile strain lsh31 genome assembly, contig: ERS080234SCcontig000036, whole genome shotgun sequence

⇒Summary: seq-len = 2337 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1623-2247 bp Zoom in on locus 1 x10 CRISPR array Location: 1623-2247 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 1623-2247 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1623-2247 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAACZX010000024.1 Clostridioides difficile strain lsh31 genome assembly, contig: ERS080234SCcontig000024, whole genome shotgun sequence

⇒Summary: seq-len = 33764 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18728-23856 bp Zoom in on locus 1 x13 x4 x11 CRISPR array Location: 18728-19549 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 18728-19549 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 21242-21468 bp Num of repeats: 4 Spacers: s13-s15 CRISPR array Location: 21242-21468 bp Num of repeats: 4 Spacers: s13-s15 CRISPR array Location: 23170-23856 bp Num of repeats: 11 Spacers: s16-s25 CRISPR array Location: 23170-23856 bp Num of repeats: 11 Spacers: s16-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18728-19549 bp]: array | spacers
           [Locus range 21242-21468 bp]: array | spacers
           [Locus range 23170-23856 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAACZX010000009.1 Clostridioides difficile strain lsh31 genome assembly, contig: ERS080234SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 209946 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90921-91744 bp Zoom in on locus 1 x13 CRISPR array Location: 90921-91744 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 90921-91744 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90921-91744 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: CAACZX010000007.1 Clostridioides difficile strain lsh31 genome assembly, contig: ERS080234SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 261913 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2957-3705 bp Zoom in on locus 1 x12 CRISPR array Location: 2957-3705 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 2957-3705 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2957-3705 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)