CRISPRone

CRISPRone report for GCA_900687655.1_7614_4_63

♦ Seq 1: CAACZW010000025.1 Clostridioides difficile strain lsh27 genome assembly, contig: ERS080230SCcontig000025, whole genome shotgun sequence

⇒Summary: seq-len = 14245 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5458-5619 bp Zoom in on locus 1 x3 CRISPR array Location: 5458-5619 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 5458-5619 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5458-5619 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAACZW010000007.1 Clostridioides difficile strain lsh27 genome assembly, contig: ERS080230SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 213749 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23408-23825 bp Zoom in on locus 1 x7 CRISPR array Location: 23408-23825 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 23408-23825 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23408-23825 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAACZW010000016.1 Clostridioides difficile strain lsh27 genome assembly, contig: ERS080230SCcontig000016, whole genome shotgun sequence

⇒Summary: seq-len = 97370 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18501-19125 bp Zoom in on locus 1 x10 CRISPR array Location: 18501-19125 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 18501-19125 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18501-19125 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAACZW010000001.1 Clostridioides difficile strain lsh27 genome assembly, contig: ERS080230SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 641230 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 254228-264452 bp Zoom in on locus 1 x11 CRISPR array Location: 254228-254914 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 254228-254914 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09725:cas2 Type: universal Location: 255098-255364 bp Gene: cd09722:cas1 Type: universal Location: 255367-256347 bp Gene: pfam01930:cas4 Type: Type-I Location: 256350-256868 bp Gene: COG1203:cas3 Type: Type-I Location: 256916-259237 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 259248-259949 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 259951-260865 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 260867-262717 bp Gene: pfam01881:cas6 Type: other Location: 262723-263517 bp Gene: pfam13280:WYL Type: other Location: 263538-264452 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 254228-254914 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAACZW010000005.1 Clostridioides difficile strain lsh27 genome assembly, contig: ERS080230SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 220643 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90930-91352 bp Zoom in on locus 1 x7 CRISPR array Location: 90930-91352 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 90930-91352 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90930-91352 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAACZW010000013.1 Clostridioides difficile strain lsh27 genome assembly, contig: ERS080230SCcontig000013, whole genome shotgun sequence

⇒Summary: seq-len = 133081 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44837-45921 bp 2 Locus 2: 120793-121152 bp Zoom in on locus 1 x17 Zoom in on locus 2 x6 CRISPR array Location: 44837-45921 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 44837-45921 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 120793-121152 bp Num of repeats: 6 Spacers: s17-s21 CRISPR array Location: 120793-121152 bp Num of repeats: 6 Spacers: s17-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 44837-45921 bp]: array | spacers
           [Locus range 120793-121152 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAACZW010000002.1 Clostridioides difficile strain lsh27 genome assembly, contig: ERS080230SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 548701 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 256299-257119 bp 2 Locus 2: 420496-428805 bp 3 Locus 3: 502085-502178 bp Zoom in on locus 1 x13 Zoom in on locus 2 Zoom in on locus 3 x2 CRISPR array Location: 256299-257119 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 256299-257119 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09641:cas3HD Type: Type-I Location: 420496-422904 bp Gene: cd09693:cas5 Type: Type-I Location: 422931-423728 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 423744-424757 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 424777-426243 bp Gene: pfam01881:cas6 Type: other Location: 426248-426985 bp Gene: unk Type: unknown Location: 427086-427262 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 427696-428805 bp CRISPR array Location: 502085-502178 bp Num of repeats: 2 Spacers: s13-s13 CRISPR array Location: 502085-502178 bp Num of repeats: 2 Spacers: s13-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 256299-257119 bp]: array | spacers
           [Locus range 502085-502178 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: CAACZW010000010.1 Clostridioides difficile strain lsh27 genome assembly, contig: ERS080230SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 170970 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56583-57987 bp Zoom in on locus 1 x22 CRISPR array Location: 56583-57987 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 56583-57987 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 56583-57987 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: CAACZW010000009.1 Clostridioides difficile strain lsh27 genome assembly, contig: ERS080230SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 183552 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 165033-166153 bp Zoom in on locus 1 x6 x3 CRISPR array Location: 165033-165393 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 165033-165393 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 165991-166153 bp Num of repeats: 3 Spacers: s6-s7 CRISPR array Location: 165991-166153 bp Num of repeats: 3 Spacers: s6-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 165033-165393 bp]: array | spacers
           [Locus range 165991-166153 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)