CRISPRone

CRISPRone report for GCA_900687715.1_7614_4_74

♦ Seq 1: CAACZZ010000009.1 Clostridioides difficile strain lsh38 genome assembly, contig: ERS080241SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 192222 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 172652-173144 bp Zoom in on locus 1 x8 CRISPR array Location: 172652-173144 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 172652-173144 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 172652-173144 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAACZZ010000008.1 Clostridioides difficile strain lsh38 genome assembly, contig: ERS080241SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 209665 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 163895-174477 bp Zoom in on locus 1 x16 Gene: pfam13280:WYL Type: other Location: 163895-164809 bp Gene: pfam01881:cas6 Type: other Location: 164830-165624 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 165630-167507 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 167509-168423 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 168425-169126 bp Gene: cd09641:cas3HD Type: Type-I Location: 169137-171458 bp Gene: pfam01930:cas4 Type: Type-I Location: 171473-172024 bp Gene: cd09722:cas1 Type: universal Location: 172027-173007 bp Gene: cd09725:cas2 Type: universal Location: 173010-173276 bp CRISPR array Location: 173460-174477 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 173460-174477 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 173460-174477 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAACZZ010000002.1 Clostridioides difficile strain lsh38 genome assembly, contig: ERS080241SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 387520 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 284716-284810 bp Zoom in on locus 1 x2 CRISPR array Location: 284716-284810 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 284716-284810 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 284716-284810 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAACZZ010000001.1 Clostridioides difficile strain lsh38 genome assembly, contig: ERS080241SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 985959 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 240263-240358 bp 2 Locus 2: 313639-321957 bp 3 Locus 3: 483929-484683 bp 4 Locus 4: 832782-833008 bp Zoom in on locus 1 x2 Zoom in on locus 2 Zoom in on locus 3 x12 Zoom in on locus 4 x4 CRISPR array Location: 240263-240358 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 240263-240358 bp Num of repeats: 2 Spacers: s1-s1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 313639-314748 bp Gene: unk Type: unknown Location: 315182-315358 bp Gene: pfam01881:cas6 Type: other Location: 315459-316196 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 316201-317676 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 317696-318709 bp Gene: cd09693:cas5 Type: Type-I Location: 318725-319522 bp Gene: cd09641:cas3HD Type: Type-I Location: 319549-321957 bp CRISPR array Location: 483929-484683 bp Num of repeats: 12 Spacers: s2-s12 CRISPR array Location: 483929-484683 bp Num of repeats: 12 Spacers: s2-s12 CRISPR array Location: 832782-833008 bp Num of repeats: 4 Spacers: s13-s15 CRISPR array Location: 832782-833008 bp Num of repeats: 4 Spacers: s13-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 240263-240358 bp]: array | spacers
           [Locus range 483929-484683 bp]: array | spacers
           [Locus range 832782-833008 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAACZZ010000010.1 Clostridioides difficile strain lsh38 genome assembly, contig: ERS080241SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 176873 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3975-5122 bp Zoom in on locus 1 x18 CRISPR array Location: 3975-5122 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 3975-5122 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3975-5122 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAACZZ010000023.1 Clostridioides difficile strain lsh38 genome assembly, contig: ERS080241SCcontig000023, whole genome shotgun sequence

⇒Summary: seq-len = 10382 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 104-2619 bp Zoom in on locus 1 x6 x8 CRISPR array Location: 104-462 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 104-462 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 2129-2619 bp Num of repeats: 8 Spacers: s6-s12 CRISPR array Location: 2129-2619 bp Num of repeats: 8 Spacers: s6-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 104-462 bp]: array | spacers
           [Locus range 2129-2619 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAACZZ010000004.1 Clostridioides difficile strain lsh38 genome assembly, contig: ERS080241SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 277212 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 158457-158813 bp Zoom in on locus 1 x6 CRISPR array Location: 158457-158813 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 158457-158813 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 158457-158813 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)