CRISPRone

CRISPRone report for GCA_900687775.1_7614_4_49

♦ Seq 1: CAADAA010000001.1 Clostridioides difficile strain lsh12 genome assembly, contig: ERS080216SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 679543 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 176483-177041 bp 2 Locus 2: 250323-258669 bp 3 Locus 3: 420652-421406 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x12 CRISPR array Location: 176483-177041 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 176483-177041 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 250323-251432 bp Gene: unk Type: unknown Location: 251891-252067 bp Gene: pfam01881:cas6 Type: other Location: 252168-252905 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 252910-254385 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 254405-255421 bp Gene: cd09693:cas5 Type: Type-I Location: 255437-256234 bp Gene: cd09641:cas3HD Type: Type-I Location: 256261-258669 bp CRISPR array Location: 420652-421406 bp Num of repeats: 12 Spacers: s9-s19 CRISPR array Location: 420652-421406 bp Num of repeats: 12 Spacers: s9-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 176483-177041 bp]: array | spacers
           [Locus range 420652-421406 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADAA010000010.1 Clostridioides difficile strain lsh12 genome assembly, contig: ERS080216SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 160440 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36895-47738 bp Zoom in on locus 1 x20 CRISPR array Location: 36895-38173 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 36895-38173 bp Num of repeats: 20 Spacers: s1-s19 Gene: cd09725:cas2 Type: universal Location: 38357-38623 bp Gene: cd09722:cas1 Type: universal Location: 38626-39606 bp Gene: pfam01930:cas4 Type: Type-I Location: 39609-40127 bp Gene: COG1203:cas3 Type: Type-I Location: 40175-42496 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 42507-43208 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 43210-44124 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 44126-46003 bp Gene: pfam01881:cas6 Type: other Location: 46009-46803 bp Gene: pfam13280:WYL Type: other Location: 46824-47738 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 36895-38173 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADAA010000013.1 Clostridioides difficile strain lsh12 genome assembly, contig: ERS080216SCcontig000013, whole genome shotgun sequence

⇒Summary: seq-len = 139546 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 43194-43288 bp Zoom in on locus 1 x2 CRISPR array Location: 43194-43288 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 43194-43288 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 43194-43288 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADAA010000007.1 Clostridioides difficile strain lsh12 genome assembly, contig: ERS080216SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 187930 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 154412-154572 bp Zoom in on locus 1 x3 CRISPR array Location: 154412-154572 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 154412-154572 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 154412-154572 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADAA010000022.1 Clostridioides difficile strain lsh12 genome assembly, contig: ERS080216SCcontig000022, whole genome shotgun sequence

⇒Summary: seq-len = 61216 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56641-57723 bp Zoom in on locus 1 x17 CRISPR array Location: 56641-57723 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 56641-57723 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 56641-57723 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADAA010000005.1 Clostridioides difficile strain lsh12 genome assembly, contig: ERS080216SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 215677 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90904-91326 bp Zoom in on locus 1 x7 CRISPR array Location: 90904-91326 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 90904-91326 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90904-91326 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAADAA010000024.1 Clostridioides difficile strain lsh12 genome assembly, contig: ERS080216SCcontig000024, whole genome shotgun sequence

⇒Summary: seq-len = 43124 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22456-26236 bp Zoom in on locus 1 x2 x6 CRISPR array Location: 22456-22551 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 22456-22551 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 25881-26236 bp Num of repeats: 6 Spacers: s2-s6 CRISPR array Location: 25881-26236 bp Num of repeats: 6 Spacers: s2-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 22456-22551 bp]: array | spacers
           [Locus range 25881-26236 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: CAADAA010000020.1 Clostridioides difficile strain lsh12 genome assembly, contig: ERS080216SCcontig000020, whole genome shotgun sequence

⇒Summary: seq-len = 82973 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63407-63961 bp Zoom in on locus 1 x9 CRISPR array Location: 63407-63961 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 63407-63961 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63407-63961 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: CAADAA010000002.1 Clostridioides difficile strain lsh12 genome assembly, contig: ERS080216SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 274984 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 86119-87197 bp Zoom in on locus 1 x17 CRISPR array Location: 86119-87197 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 86119-87197 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 86119-87197 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)