CRISPRone

CRISPRone report for GCA_900687785.1_7614_4_76

♦ Seq 1: CAADAB010000007.1 Clostridioides difficile strain lsh40 genome assembly, contig: ERS080243SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 192812 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 174102-174527 bp Zoom in on locus 1 x7 CRISPR array Location: 174102-174527 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 174102-174527 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 174102-174527 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADAB010000008.1 Clostridioides difficile strain lsh40 genome assembly, contig: ERS080243SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 176267 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 171766-172781 bp Zoom in on locus 1 x16 CRISPR array Location: 171766-172781 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 171766-172781 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 171766-172781 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADAB010000001.1 Clostridioides difficile strain lsh40 genome assembly, contig: ERS080243SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1019714 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 152353-152578 bp 2 Locus 2: 536621-537242 bp 3 Locus 3: 699214-707532 bp 4 Locus 4: 780814-780908 bp Zoom in on locus 1 x4 Zoom in on locus 2 x10 Zoom in on locus 3 Zoom in on locus 4 x2 CRISPR array Location: 152353-152578 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 152353-152578 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 536621-537242 bp Num of repeats: 10 Spacers: s4-s12 CRISPR array Location: 536621-537242 bp Num of repeats: 10 Spacers: s4-s12 Gene: cd09641:cas3HD Type: Type-I Location: 699214-701622 bp Gene: cd09693:cas5 Type: Type-I Location: 701649-702446 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 702462-703475 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 703495-704970 bp Gene: pfam01881:cas6 Type: other Location: 704975-705712 bp Gene: unk Type: unknown Location: 705813-705989 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 706423-707532 bp CRISPR array Location: 780814-780908 bp Num of repeats: 2 Spacers: s13-s13 CRISPR array Location: 780814-780908 bp Num of repeats: 2 Spacers: s13-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 152353-152578 bp]: array | spacers
           [Locus range 536621-537242 bp]: array | spacers
           [Locus range 780814-780908 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADAB010000004.1 Clostridioides difficile strain lsh40 genome assembly, contig: ERS080243SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 213003 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 94248-94604 bp Zoom in on locus 1 x6 CRISPR array Location: 94248-94604 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 94248-94604 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 94248-94604 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADAB010000025.1 Clostridioides difficile strain lsh40 genome assembly, contig: ERS080243SCcontig000025, whole genome shotgun sequence

⇒Summary: seq-len = 26044 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8904-10953 bp Zoom in on locus 1 x3 x2 CRISPR array Location: 8904-9065 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 8904-9065 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 10859-10953 bp Num of repeats: 2 Spacers: s3-s3 CRISPR array Location: 10859-10953 bp Num of repeats: 2 Spacers: s3-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8904-9065 bp]: array | spacers
           [Locus range 10859-10953 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADAB010000006.1 Clostridioides difficile strain lsh40 genome assembly, contig: ERS080243SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 209377 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 35140-45523 bp Zoom in on locus 1 x13 CRISPR array Location: 35140-35958 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 35140-35958 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09725:cas2 Type: universal Location: 36142-36408 bp Gene: cd09722:cas1 Type: universal Location: 36411-37391 bp Gene: pfam01930:cas4 Type: Type-I Location: 37394-37912 bp Gene: cd09641:cas3HD Type: Type-I Location: 37960-40281 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 40292-40993 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 40995-41909 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 41911-43788 bp Gene: pfam01881:cas6 Type: other Location: 43794-44588 bp Gene: pfam13280:WYL Type: other Location: 44609-45523 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 35140-35958 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAADAB010000002.1 Clostridioides difficile strain lsh40 genome assembly, contig: ERS080243SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 360724 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 257849-257943 bp Zoom in on locus 1 x2 CRISPR array Location: 257849-257943 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 257849-257943 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 257849-257943 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)