CRISPRone

CRISPRone report for GCA_900687825.1_7614_4_75

♦ Seq 1: CAADAC010000006.1 Clostridioides difficile strain lsh39 genome assembly, contig: ERS080242SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 228001 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56512-58052 bp 2 Locus 2: 226274-226500 bp Zoom in on locus 1 x24 Zoom in on locus 2 x4 CRISPR array Location: 56512-58052 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 56512-58052 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 226274-226500 bp Num of repeats: 4 Spacers: s24-s26 CRISPR array Location: 226274-226500 bp Num of repeats: 4 Spacers: s24-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 56512-58052 bp]: array | spacers
           [Locus range 226274-226500 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADAC010000028.1 Clostridioides difficile strain lsh39 genome assembly, contig: ERS080242SCcontig000028, whole genome shotgun sequence

⇒Summary: seq-len = 9690 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1032-6367 bp Zoom in on locus 1 x4 x13 x4 CRISPR array Location: 1032-1258 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1032-1258 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1860-2680 bp Num of repeats: 13 Spacers: s4-s15 CRISPR array Location: 1860-2680 bp Num of repeats: 13 Spacers: s4-s15 CRISPR array Location: 6142-6367 bp Num of repeats: 4 Spacers: s16-s18 CRISPR array Location: 6142-6367 bp Num of repeats: 4 Spacers: s16-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1032-1258 bp]: array | spacers
           [Locus range 1860-2680 bp]: array | spacers
           [Locus range 6142-6367 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADAC010000001.1 Clostridioides difficile strain lsh39 genome assembly, contig: ERS080242SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 735640 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 237899-238255 bp 2 Locus 2: 311521-319386 bp 3 Locus 3: 481351-482239 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x14 CRISPR array Location: 237899-238255 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 237899-238255 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 311521-312630 bp Gene: pfam01881:cas6 Type: other Location: 312888-313625 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 313630-315105 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 315125-316138 bp Gene: cd09693:cas5 Type: Type-I Location: 316154-316951 bp Gene: cd09641:cas3HD Type: Type-I Location: 316978-319386 bp CRISPR array Location: 481351-482239 bp Num of repeats: 14 Spacers: s6-s18 CRISPR array Location: 481351-482239 bp Num of repeats: 14 Spacers: s6-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 237899-238255 bp]: array | spacers
           [Locus range 481351-482239 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADAC010000015.1 Clostridioides difficile strain lsh39 genome assembly, contig: ERS080242SCcontig000015, whole genome shotgun sequence

⇒Summary: seq-len = 97280 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 79086-79577 bp Zoom in on locus 1 x8 CRISPR array Location: 79086-79577 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 79086-79577 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 79086-79577 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADAC010000008.1 Clostridioides difficile strain lsh39 genome assembly, contig: ERS080242SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 213619 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90949-91375 bp Zoom in on locus 1 x7 CRISPR array Location: 90949-91375 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 90949-91375 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90949-91375 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADAC010000019.1 Clostridioides difficile strain lsh39 genome assembly, contig: ERS080242SCcontig000019, whole genome shotgun sequence

⇒Summary: seq-len = 60882 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 14654-15927 bp Zoom in on locus 1 x20 CRISPR array Location: 14654-15927 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 14654-15927 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 14654-15927 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)