CRISPRone

CRISPRone report for GCA_900687925.1_7614_7_1

♦ Seq 1: CAADAE010000001.1 Clostridioides difficile strain clo01 genome assembly, contig: ERS080168SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 530845 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252645-263782 bp 2 Locus 2: 486010-486103 bp Zoom in on locus 1 x25 Zoom in on locus 2 x2 CRISPR array Location: 252645-254244 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 252645-254244 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09725:cas2 Type: universal Location: 254428-254694 bp Gene: cd09722:cas1 Type: universal Location: 254697-255677 bp Gene: pfam01930:cas4 Type: Type-I Location: 255680-256198 bp Gene: COG1203:cas3 Type: Type-I Location: 256246-258567 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 258578-259279 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 259281-260195 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 260197-262047 bp Gene: pfam01881:cas6 Type: other Location: 262053-262847 bp Gene: pfam13280:WYL Type: other Location: 262868-263782 bp CRISPR array Location: 486010-486103 bp Num of repeats: 2 Spacers: s25-s25 CRISPR array Location: 486010-486103 bp Num of repeats: 2 Spacers: s25-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252645-254244 bp]: array | spacers
           [Locus range 486010-486103 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADAE010000011.1 Clostridioides difficile strain clo01 genome assembly, contig: ERS080168SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 165707 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 55215-55376 bp Zoom in on locus 1 x3 CRISPR array Location: 55215-55376 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 55215-55376 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 55215-55376 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADAE010000002.1 Clostridioides difficile strain clo01 genome assembly, contig: ERS080168SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 370798 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44385-44743 bp 2 Locus 2: 118025-126346 bp 3 Locus 3: 289618-290235 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x10 CRISPR array Location: 44385-44743 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 44385-44743 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 118025-119134 bp Gene: unk Type: unknown Location: 119568-119744 bp Gene: pfam01881:cas6 Type: other Location: 119845-120582 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 120587-122062 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 122082-123098 bp Gene: cd09693:cas5 Type: Type-I Location: 123114-123911 bp Gene: cd09641:cas3HD Type: Type-I Location: 123938-126346 bp CRISPR array Location: 289618-290235 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 289618-290235 bp Num of repeats: 10 Spacers: s6-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44385-44743 bp]: array | spacers
           [Locus range 289618-290235 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADAE010000018.1 Clostridioides difficile strain clo01 genome assembly, contig: ERS080168SCcontig000018, whole genome shotgun sequence

⇒Summary: seq-len = 68249 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63628-64777 bp Zoom in on locus 1 x18 CRISPR array Location: 63628-64777 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 63628-64777 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63628-64777 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADAE010000007.1 Clostridioides difficile strain clo01 genome assembly, contig: ERS080168SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 216028 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 124574-125133 bp Zoom in on locus 1 x9 CRISPR array Location: 124574-125133 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 124574-125133 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 124574-125133 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADAE010000005.1 Clostridioides difficile strain clo01 genome assembly, contig: ERS080168SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 247056 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 132612-137476 bp 2 Locus 2: 228205-228961 bp Zoom in on locus 1 x13 x4 x7 Zoom in on locus 2 x12 CRISPR array Location: 132612-133431 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 132612-133431 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 135225-135448 bp Num of repeats: 4 Spacers: s13-s15 CRISPR array Location: 135225-135448 bp Num of repeats: 4 Spacers: s13-s15 CRISPR array Location: 137053-137476 bp Num of repeats: 7 Spacers: s16-s21 CRISPR array Location: 137053-137476 bp Num of repeats: 7 Spacers: s16-s21 CRISPR array Location: 228205-228961 bp Num of repeats: 12 Spacers: s22-s32 CRISPR array Location: 228205-228961 bp Num of repeats: 12 Spacers: s22-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 132612-133431 bp]: array | spacers
           [Locus range 135225-135448 bp]: array | spacers
           [Locus range 137053-137476 bp]: array | spacers
           [Locus range 228205-228961 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)