CRISPRone

CRISPRone report for GCA_900687935.1_7614_4_92

♦ Seq 1: CAADAF010000002.1 Clostridioides difficile strain R711 genome assembly, contig: ERS080259SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 389849 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 80866-92063 bp 2 Locus 2: 305931-306024 bp Zoom in on locus 1 x26 Zoom in on locus 2 x2 CRISPR array Location: 80866-82525 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 80866-82525 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09725:cas2 Type: universal Location: 82709-82975 bp Gene: cd09722:cas1 Type: universal Location: 82978-83958 bp Gene: pfam01930:cas4 Type: Type-I Location: 83961-84479 bp Gene: cd09641:cas3HD Type: Type-I Location: 84527-86848 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 86859-87560 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 87562-88476 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 88478-90328 bp Gene: pfam01881:cas6 Type: other Location: 90334-91128 bp Gene: pfam13280:WYL Type: other Location: 91149-92063 bp CRISPR array Location: 305931-306024 bp Num of repeats: 2 Spacers: s26-s26 CRISPR array Location: 305931-306024 bp Num of repeats: 2 Spacers: s26-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 80866-82525 bp]: array | spacers
           [Locus range 305931-306024 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADAF010000005.1 Clostridioides difficile strain R711 genome assembly, contig: ERS080259SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 216260 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90946-91701 bp Zoom in on locus 1 x12 CRISPR array Location: 90946-91701 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 90946-91701 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90946-91701 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADAF010000019.1 Clostridioides difficile strain R711 genome assembly, contig: ERS080259SCcontig000019, whole genome shotgun sequence

⇒Summary: seq-len = 67567 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3487-3911 bp Zoom in on locus 1 x7 CRISPR array Location: 3487-3911 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 3487-3911 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3487-3911 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADAF010000003.1 Clostridioides difficile strain R711 genome assembly, contig: ERS080259SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 273229 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 86038-86398 bp Zoom in on locus 1 x6 CRISPR array Location: 86038-86398 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 86038-86398 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 86038-86398 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADAF010000011.1 Clostridioides difficile strain R711 genome assembly, contig: ERS080259SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 131201 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 112653-113207 bp Zoom in on locus 1 x9 CRISPR array Location: 112653-113207 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 112653-113207 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 112653-113207 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADAF010000028.1 Clostridioides difficile strain R711 genome assembly, contig: ERS080259SCcontig000028, whole genome shotgun sequence

⇒Summary: seq-len = 19366 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4553-6995 bp Zoom in on locus 1 x2 x10 CRISPR array Location: 4553-4647 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 4553-4647 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 6372-6995 bp Num of repeats: 10 Spacers: s2-s10 CRISPR array Location: 6372-6995 bp Num of repeats: 10 Spacers: s2-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4553-4647 bp]: array | spacers
           [Locus range 6372-6995 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAADAF010000001.1 Clostridioides difficile strain R711 genome assembly, contig: ERS080259SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 591273 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44614-44708 bp 2 Locus 2: 117987-126308 bp 3 Locus 3: 289536-290022 bp Zoom in on locus 1 x2 Zoom in on locus 2 Zoom in on locus 3 x8 CRISPR array Location: 44614-44708 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 44614-44708 bp Num of repeats: 2 Spacers: s1-s1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 117987-119096 bp Gene: unk Type: unknown Location: 119530-119706 bp Gene: pfam01881:cas6 Type: other Location: 119807-120544 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 120549-122024 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 122044-123060 bp Gene: cd09693:cas5 Type: Type-I Location: 123076-123873 bp Gene: cd09641:cas3HD Type: Type-I Location: 123900-126308 bp CRISPR array Location: 289536-290022 bp Num of repeats: 8 Spacers: s2-s8 CRISPR array Location: 289536-290022 bp Num of repeats: 8 Spacers: s2-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44614-44708 bp]: array | spacers
           [Locus range 289536-290022 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: CAADAF010000022.1 Clostridioides difficile strain R711 genome assembly, contig: ERS080259SCcontig000022, whole genome shotgun sequence

⇒Summary: seq-len = 59689 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 47339-47764 bp Zoom in on locus 1 x7 CRISPR array Location: 47339-47764 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 47339-47764 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 47339-47764 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)