CRISPRone

CRISPRone report for GCA_900687965.1_7614_7_16

♦ Seq 1: CAADAJ010000004.1 Clostridioides difficile strain clo16 genome assembly, contig: ERS080183SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 341513 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 164638-174725 bp Zoom in on locus 1 x9 Gene: pfam13280:WYL Type: other Location: 164638-165525 bp Gene: pfam01881:cas6 Type: other Location: 165603-166340 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 166346-168223 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 168225-169139 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 169141-169842 bp Gene: COG1203:cas3 Type: Type-I Location: 169853-172174 bp Gene: pfam01930:cas4 Type: Type-I Location: 172189-172659 bp Gene: cd09722:cas1 Type: universal Location: 172743-173723 bp Gene: cd09725:cas2 Type: universal Location: 173726-173992 bp CRISPR array Location: 174176-174725 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 174176-174725 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 174176-174725 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADAJ010000003.1 Clostridioides difficile strain clo16 genome assembly, contig: ERS080183SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 491763 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 247544-248040 bp 2 Locus 2: 321322-329187 bp Zoom in on locus 1 x8 Zoom in on locus 2 CRISPR array Location: 247544-248040 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 247544-248040 bp Num of repeats: 8 Spacers: s1-s7 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 321322-322431 bp Gene: pfam01881:cas6 Type: other Location: 322689-323426 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 323431-324906 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 324926-325939 bp Gene: cd09693:cas5 Type: Type-I Location: 325955-326752 bp Gene: cd09641:cas3HD Type: Type-I Location: 326779-329187 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 247544-248040 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADAJ010000008.1 Clostridioides difficile strain clo16 genome assembly, contig: ERS080183SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 205857 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90903-91851 bp Zoom in on locus 1 x15 CRISPR array Location: 90903-91851 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 90903-91851 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90903-91851 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADAJ010000013.1 Clostridioides difficile strain clo16 genome assembly, contig: ERS080183SCcontig000013, whole genome shotgun sequence

⇒Summary: seq-len = 99449 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2949-3371 bp Zoom in on locus 1 x7 CRISPR array Location: 2949-3371 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 2949-3371 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2949-3371 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADAJ010000007.1 Clostridioides difficile strain clo16 genome assembly, contig: ERS080183SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 250288 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18391-18883 bp 2 Locus 2: 192458-193671 bp Zoom in on locus 1 x8 Zoom in on locus 2 x19 CRISPR array Location: 18391-18883 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 18391-18883 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 192458-193671 bp Num of repeats: 19 Spacers: s8-s25 CRISPR array Location: 192458-193671 bp Num of repeats: 19 Spacers: s8-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18391-18883 bp]: array | spacers
           [Locus range 192458-193671 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)