CRISPRone

CRISPRone report for GCA_900687975.1_7614_7_15

♦ Seq 1: CAADAH010000038.1 Clostridioides difficile strain clo15 genome assembly, contig: ERS080182SCcontig000038, whole genome shotgun sequence

⇒Summary: seq-len = 2327 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 47-2322 bp Zoom in on locus 1 x9 x2 CRISPR array Location: 47-604 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 47-604 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 2228-2322 bp Num of repeats: 2 Spacers: s9-s9 CRISPR array Location: 2228-2322 bp Num of repeats: 2 Spacers: s9-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 47-604 bp]: array | spacers
           [Locus range 2228-2322 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADAH010000023.1 Clostridioides difficile strain clo15 genome assembly, contig: ERS080182SCcontig000023, whole genome shotgun sequence

⇒Summary: seq-len = 32804 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10026-15218 bp Zoom in on locus 1 x11 x4 x14 CRISPR array Location: 10026-10711 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 10026-10711 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 12414-12639 bp Num of repeats: 4 Spacers: s11-s13 CRISPR array Location: 12414-12639 bp Num of repeats: 4 Spacers: s11-s13 CRISPR array Location: 14333-15218 bp Num of repeats: 14 Spacers: s14-s26 CRISPR array Location: 14333-15218 bp Num of repeats: 14 Spacers: s14-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10026-10711 bp]: array | spacers
           [Locus range 12414-12639 bp]: array | spacers
           [Locus range 14333-15218 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADAH010000003.1 Clostridioides difficile strain clo15 genome assembly, contig: ERS080182SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 367732 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 253054-253344 bp Zoom in on locus 1 x5 CRISPR array Location: 253054-253344 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 253054-253344 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 253054-253344 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADAH010000004.1 Clostridioides difficile strain clo15 genome assembly, contig: ERS080182SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 300949 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18206-20015 bp 2 Locus 2: 100626-100916 bp 3 Locus 3: 236020-237355 bp Zoom in on locus 1 x28 Zoom in on locus 2 x5 Zoom in on locus 3 x21 CRISPR array Location: 18206-20015 bp Num of repeats: 28 Spacers: s1-s27 CRISPR array Location: 18206-20015 bp Num of repeats: 28 Spacers: s1-s27 CRISPR array Location: 100626-100916 bp Num of repeats: 5 Spacers: s28-s31 CRISPR array Location: 100626-100916 bp Num of repeats: 5 Spacers: s28-s31 CRISPR array Location: 236020-237355 bp Num of repeats: 21 Spacers: s32-s51 CRISPR array Location: 236020-237355 bp Num of repeats: 21 Spacers: s32-s51 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18206-20015 bp]: array | spacers
           [Locus range 100626-100916 bp]: array | spacers
           [Locus range 236020-237355 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADAH010000001.1 Clostridioides difficile strain clo15 genome assembly, contig: ERS080182SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 742537 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 239597-240093 bp 2 Locus 2: 313375-321721 bp 3 Locus 3: 485140-485888 bp Zoom in on locus 1 x8 Zoom in on locus 2 Zoom in on locus 3 x12 CRISPR array Location: 239597-240093 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 239597-240093 bp Num of repeats: 8 Spacers: s1-s7 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 313375-314484 bp Gene: unk Type: unknown Location: 314943-315119 bp Gene: pfam01881:cas6 Type: other Location: 315220-315957 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 315962-317437 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 317457-318473 bp Gene: cd09693:cas5 Type: Type-I Location: 318489-319286 bp Gene: cd09641:cas3HD Type: Type-I Location: 319313-321721 bp CRISPR array Location: 485140-485888 bp Num of repeats: 12 Spacers: s8-s18 CRISPR array Location: 485140-485888 bp Num of repeats: 12 Spacers: s8-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 239597-240093 bp]: array | spacers
           [Locus range 485140-485888 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADAH010000002.1 Clostridioides difficile strain clo15 genome assembly, contig: ERS080182SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 475851 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 275222-285144 bp Zoom in on locus 1 x6 CRISPR array Location: 275222-275579 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 275222-275579 bp Num of repeats: 6 Spacers: s1-s5 Gene: cd09725:cas2 Type: universal Location: 275763-276029 bp Gene: cd09722:cas1 Type: universal Location: 276032-277012 bp Gene: pfam01930:cas4 Type: Type-I Location: 277015-277533 bp Gene: cd09641:cas3HD Type: Type-I Location: 277581-279902 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 279913-280614 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 280616-281530 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 281532-283409 bp Gene: pfam01881:cas6 Type: other Location: 283415-284209 bp Gene: pfam13280:WYL Type: other Location: 284230-285144 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 275222-275579 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAADAH010000007.1 Clostridioides difficile strain clo15 genome assembly, contig: ERS080182SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 209743 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91005-91828 bp Zoom in on locus 1 x13 CRISPR array Location: 91005-91828 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 91005-91828 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91005-91828 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)