CRISPRone

CRISPRone report for GCA_900688085.1_7614_7_25

♦ Seq 1: CAADAK010000031.1 Clostridioides difficile strain clo26 genome assembly, contig: ERS080192SCcontig000031, whole genome shotgun sequence

⇒Summary: seq-len = 14080 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8783-8945 bp Zoom in on locus 1 x3 CRISPR array Location: 8783-8945 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 8783-8945 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8783-8945 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADAK010000007.1 Clostridioides difficile strain clo26 genome assembly, contig: ERS080192SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 209336 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90946-91369 bp Zoom in on locus 1 x7 CRISPR array Location: 90946-91369 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 90946-91369 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90946-91369 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADAK010000024.1 Clostridioides difficile strain clo26 genome assembly, contig: ERS080192SCcontig000024, whole genome shotgun sequence

⇒Summary: seq-len = 27808 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7116-9300 bp Zoom in on locus 1 x3 x4 CRISPR array Location: 7116-7275 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 7116-7275 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 9076-9300 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 9076-9300 bp Num of repeats: 4 Spacers: s3-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7116-7275 bp]: array | spacers
           [Locus range 9076-9300 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADAK010000006.1 Clostridioides difficile strain clo26 genome assembly, contig: ERS080192SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 251237 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56570-57981 bp 2 Locus 2: 232639-233261 bp Zoom in on locus 1 x22 Zoom in on locus 2 x10 CRISPR array Location: 56570-57981 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 56570-57981 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 232639-233261 bp Num of repeats: 10 Spacers: s22-s30 CRISPR array Location: 232639-233261 bp Num of repeats: 10 Spacers: s22-s30 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 56570-57981 bp]: array | spacers
           [Locus range 232639-233261 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADAK010000016.1 Clostridioides difficile strain clo26 genome assembly, contig: ERS080192SCcontig000016, whole genome shotgun sequence

⇒Summary: seq-len = 69308 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22879-24549 bp Zoom in on locus 1 x26 CRISPR array Location: 22879-24549 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 22879-24549 bp Num of repeats: 26 Spacers: s1-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 22879-24549 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADAK010000001.1 Clostridioides difficile strain clo26 genome assembly, contig: ERS080192SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 747016 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244411-244506 bp 2 Locus 2: 317786-325651 bp 3 Locus 3: 488071-488497 bp Zoom in on locus 1 x2 Zoom in on locus 2 Zoom in on locus 3 x7 CRISPR array Location: 244411-244506 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 244411-244506 bp Num of repeats: 2 Spacers: s1-s1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 317786-318895 bp Gene: pfam01881:cas6 Type: other Location: 319153-319890 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 319895-321370 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 321390-322403 bp Gene: cd09693:cas5 Type: Type-I Location: 322419-323216 bp Gene: cd09641:cas3HD Type: Type-I Location: 323243-325651 bp CRISPR array Location: 488071-488497 bp Num of repeats: 7 Spacers: s2-s7 CRISPR array Location: 488071-488497 bp Num of repeats: 7 Spacers: s2-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244411-244506 bp]: array | spacers
           [Locus range 488071-488497 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAADAK010000002.1 Clostridioides difficile strain clo26 genome assembly, contig: ERS080192SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 426918 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252366-262546 bp Zoom in on locus 1 x10 CRISPR array Location: 252366-252981 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 252366-252981 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09725:cas2 Type: universal Location: 253165-253431 bp Gene: cd09722:cas1 Type: universal Location: 253434-254414 bp Gene: pfam01930:cas4 Type: Type-I Location: 254417-254935 bp Gene: COG1203:cas3 Type: Type-I Location: 254983-257304 bp Gene: cd09693:cas5 Type: Type-I Location: 257315-258016 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 258018-258932 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 258934-260811 bp Gene: pfam01881:cas6 Type: other Location: 260817-261554 bp Gene: pfam13280:WYL Type: other Location: 261632-262546 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252366-252981 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: CAADAK010000004.1 Clostridioides difficile strain clo26 genome assembly, contig: ERS080192SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 286087 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32869-33098 bp Zoom in on locus 1 x4 CRISPR array Location: 32869-33098 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 32869-33098 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 32869-33098 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)