CRISPRone

CRISPRone report for GCA_900688195.1_7614_7_31

♦ Seq 1: CAADAO010000003.1 Clostridioides difficile strain clo33 genome assembly, contig: ERS080198SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 364215 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3486-4695 bp 2 Locus 2: 322454-322548 bp Zoom in on locus 1 x19 Zoom in on locus 2 x2 CRISPR array Location: 3486-4695 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 3486-4695 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 322454-322548 bp Num of repeats: 2 Spacers: s19-s19 CRISPR array Location: 322454-322548 bp Num of repeats: 2 Spacers: s19-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3486-4695 bp]: array | spacers
           [Locus range 322454-322548 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADAO010000002.1 Clostridioides difficile strain clo33 genome assembly, contig: ERS080198SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 456043 bp; # of CRISPR array = 2; # of cas gene = 14  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 167215-178158 bp 2 Locus 2: 401272-408753 bp Zoom in on locus 1 x22 Zoom in on locus 2 x20 CRISPR array Location: 167215-168620 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 167215-168620 bp Num of repeats: 22 Spacers: s1-s21 Gene: cd09725:cas2 Type: universal Location: 168804-169070 bp Gene: cd09722:cas1 Type: universal Location: 169073-170053 bp Gene: pfam01930:cas4 Type: Type-I Location: 170056-170574 bp Gene: COG1203:cas3 Type: Type-I Location: 170622-172943 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 172954-173655 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 173657-174571 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 174573-176423 bp Gene: pfam01881:cas6 Type: other Location: 176429-177223 bp Gene: pfam13280:WYL Type: other Location: 177244-178158 bp CRISPR array Location: 401272-402550 bp Num of repeats: 20 Spacers: s22-s40 CRISPR array Location: 401272-402550 bp Num of repeats: 20 Spacers: s22-s40 Gene: COG1203:cas3 Type: Type-I Location: 403117-405099 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 405110-406180 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 406201-407349 bp Gene: pfam01881:cas6 Type: other Location: 407351-408115 bp Gene: cd09693:cas5 Type: Type-I Location: 408106-408753 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 167215-168620 bp]: array | spacers
           [Locus range 401272-402550 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADAO010000001.1 Clostridioides difficile strain clo33 genome assembly, contig: ERS080198SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 748302 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 256462-257215 bp 2 Locus 2: 422725-430590 bp 3 Locus 3: 503861-503954 bp Zoom in on locus 1 x12 Zoom in on locus 2 Zoom in on locus 3 x2 CRISPR array Location: 256462-257215 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 256462-257215 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09641:cas3HD Type: Type-I Location: 422725-425133 bp Gene: cd09693:cas5 Type: Type-I Location: 425160-425957 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 425973-426986 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 427006-428481 bp Gene: pfam01881:cas6 Type: other Location: 428486-429223 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 429481-430590 bp CRISPR array Location: 503861-503954 bp Num of repeats: 2 Spacers: s12-s12 CRISPR array Location: 503861-503954 bp Num of repeats: 2 Spacers: s12-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 256462-257215 bp]: array | spacers
           [Locus range 503861-503954 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADAO010000004.1 Clostridioides difficile strain clo33 genome assembly, contig: ERS080198SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 277215 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 86198-86881 bp Zoom in on locus 1 x11 CRISPR array Location: 86198-86881 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 86198-86881 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 86198-86881 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADAO010000030.1 Clostridioides difficile strain clo33 genome assembly, contig: ERS080198SCcontig000030, whole genome shotgun sequence

⇒Summary: seq-len = 9678 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6030-7352 bp Zoom in on locus 1 x6 x6 CRISPR array Location: 6030-6388 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 6030-6388 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 6992-7352 bp Num of repeats: 6 Spacers: s6-s10 CRISPR array Location: 6992-7352 bp Num of repeats: 6 Spacers: s6-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6030-6388 bp]: array | spacers
           [Locus range 6992-7352 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADAO010000013.1 Clostridioides difficile strain clo33 genome assembly, contig: ERS080198SCcontig000013, whole genome shotgun sequence

⇒Summary: seq-len = 104355 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 85480-86169 bp Zoom in on locus 1 x11 CRISPR array Location: 85480-86169 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 85480-86169 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 85480-86169 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAADAO010000007.1 Clostridioides difficile strain clo33 genome assembly, contig: ERS080198SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 199860 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90930-91816 bp Zoom in on locus 1 x14 CRISPR array Location: 90930-91816 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 90930-91816 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90930-91816 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)