CRISPRone

CRISPRone report for GCA_900688265.1_7614_7_45

♦ Seq 1: CAADAP010000166.1 Clostridioides difficile strain lsh08 genome assembly, contig: ERS080212SCcontig000166, whole genome shotgun sequence

⇒Summary: seq-len = 439 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36-262 bp Zoom in on locus 1 x4 CRISPR array Location: 36-262 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 36-262 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 36-262 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADAP010000008.1 Clostridioides difficile strain lsh08 genome assembly, contig: ERS080212SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 202303 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91673-92494 bp Zoom in on locus 1 x13 CRISPR array Location: 91673-92494 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 91673-92494 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91673-92494 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADAP010000085.1 Clostridioides difficile strain lsh08 genome assembly, contig: ERS080212SCcontig000085, whole genome shotgun sequence

⇒Summary: seq-len = 671 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 14-174 bp Zoom in on locus 1 x3 CRISPR array Location: 14-174 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 14-174 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 14-174 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADAP010000002.1 Clostridioides difficile strain lsh08 genome assembly, contig: ERS080212SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 496938 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244340-244434 bp 2 Locus 2: 317704-325569 bp 3 Locus 3: 493383-494006 bp Zoom in on locus 1 x2 Zoom in on locus 2 Zoom in on locus 3 x10 CRISPR array Location: 244340-244434 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 244340-244434 bp Num of repeats: 2 Spacers: s1-s1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 317704-318813 bp Gene: pfam01881:cas6 Type: other Location: 319071-319808 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 319813-321288 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 321308-322321 bp Gene: cd09693:cas5 Type: Type-I Location: 322337-323134 bp Gene: cd09641:cas3HD Type: Type-I Location: 323161-325569 bp CRISPR array Location: 493383-494006 bp Num of repeats: 10 Spacers: s2-s10 CRISPR array Location: 493383-494006 bp Num of repeats: 10 Spacers: s2-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244340-244434 bp]: array | spacers
           [Locus range 493383-494006 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADAP010000001.1 Clostridioides difficile strain lsh08 genome assembly, contig: ERS080212SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 553729 bp; # of CRISPR array = 2; # of cas gene = 15  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 47554-54971 bp 2 Locus 2: 280587-292805 bp Zoom in on locus 1 x19 Zoom in on locus 2 x21 Gene: cd09693:cas5 Type: Type-I Location: 47554-48201 bp Gene: pfam01881:cas6 Type: other Location: 48192-48956 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 48958-50106 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 50127-51197 bp Gene: COG1203:cas3 Type: Type-I Location: 51208-53190 bp CRISPR array Location: 53757-54971 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 53757-54971 bp Num of repeats: 19 Spacers: s1-s18 Gene: pfam13280:WYL Type: other Location: 280587-281474 bp Gene: pfam01881:cas6 Type: other Location: 281552-282289 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 282295-284145 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 284147-285061 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 285063-285764 bp Gene: COG1203:cas3 Type: Type-I Location: 285775-287652 bp Gene: COG1203:cas3 Type: Type-I Location: 287645-289462 bp Gene: pfam01930:cas4 Type: Type-I Location: 289477-290028 bp Gene: cd09722:cas1 Type: universal Location: 290031-291011 bp Gene: cd09725:cas2 Type: universal Location: 291014-291280 bp CRISPR array Location: 291464-292805 bp Num of repeats: 21 Spacers: s19-s38 CRISPR array Location: 291464-292805 bp Num of repeats: 21 Spacers: s19-s38 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 53757-54971 bp]: array | spacers
           [Locus range 291464-292805 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADAP010000128.1 Clostridioides difficile strain lsh08 genome assembly, contig: ERS080212SCcontig000128, whole genome shotgun sequence

⇒Summary: seq-len = 549 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 336-497 bp Zoom in on locus 1 x3 CRISPR array Location: 336-497 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 336-497 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 336-497 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAADAP010000136.1 Clostridioides difficile strain lsh08 genome assembly, contig: ERS080212SCcontig000136, whole genome shotgun sequence

⇒Summary: seq-len = 509 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 379-472 bp Zoom in on locus 1 x2 CRISPR array Location: 379-472 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 379-472 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 379-472 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: CAADAP010000004.1 Clostridioides difficile strain lsh08 genome assembly, contig: ERS080212SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 273191 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5148-5702 bp Zoom in on locus 1 x9 CRISPR array Location: 5148-5702 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 5148-5702 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5148-5702 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: CAADAP010000003.1 Clostridioides difficile strain lsh08 genome assembly, contig: ERS080212SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 422414 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 103406-103501 bp 2 Locus 2: 417895-418907 bp Zoom in on locus 1 x2 Zoom in on locus 2 x16 CRISPR array Location: 103406-103501 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 103406-103501 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 417895-418907 bp Num of repeats: 16 Spacers: s2-s16 CRISPR array Location: 417895-418907 bp Num of repeats: 16 Spacers: s2-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 103406-103501 bp]: array | spacers
           [Locus range 417895-418907 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: CAADAP010000007.1 Clostridioides difficile strain lsh08 genome assembly, contig: ERS080212SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 233420 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 137438-138760 bp 2 Locus 2: 229880-230503 bp Zoom in on locus 1 x6 x6 Zoom in on locus 2 x10 CRISPR array Location: 137438-137796 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 137438-137796 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 138400-138760 bp Num of repeats: 6 Spacers: s6-s10 CRISPR array Location: 138400-138760 bp Num of repeats: 6 Spacers: s6-s10 CRISPR array Location: 229880-230503 bp Num of repeats: 10 Spacers: s11-s19 CRISPR array Location: 229880-230503 bp Num of repeats: 10 Spacers: s11-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 137438-137796 bp]: array | spacers
           [Locus range 138400-138760 bp]: array | spacers
           [Locus range 229880-230503 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)