CRISPRone

CRISPRone report for GCA_900688305.1_7614_7_39

♦ Seq 1: CAADAR010000007.1 Clostridioides difficile strain clo41 genome assembly, contig: ERS080206SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 237728 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 146217-146843 bp Zoom in on locus 1 x10 CRISPR array Location: 146217-146843 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 146217-146843 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 146217-146843 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADAR010000008.1 Clostridioides difficile strain clo41 genome assembly, contig: ERS080206SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 224859 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9158-12192 bp 2 Locus 2: 34467-34889 bp Zoom in on locus 1 x2 x4 x15 Zoom in on locus 2 x7 CRISPR array Location: 9158-9252 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 9158-9252 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 9397-9622 bp Num of repeats: 4 Spacers: s2-s4 CRISPR array Location: 9397-9622 bp Num of repeats: 4 Spacers: s2-s4 CRISPR array Location: 11238-12192 bp Num of repeats: 15 Spacers: s5-s18 CRISPR array Location: 11238-12192 bp Num of repeats: 15 Spacers: s5-s18 CRISPR array Location: 34467-34889 bp Num of repeats: 7 Spacers: s19-s24 CRISPR array Location: 34467-34889 bp Num of repeats: 7 Spacers: s19-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 9158-9252 bp]: array | spacers
           [Locus range 9397-9622 bp]: array | spacers
           [Locus range 11238-12192 bp]: array | spacers
           [Locus range 34467-34889 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADAR010000003.1 Clostridioides difficile strain clo41 genome assembly, contig: ERS080206SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 390491 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190798-200852 bp Zoom in on locus 1 x8 Gene: pfam13280:WYL Type: other Location: 190798-191712 bp Gene: pfam01881:cas6 Type: other Location: 191733-192527 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 192533-194410 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 194412-195326 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 195328-196029 bp Gene: cd09641:cas3HD Type: Type-I Location: 196040-198361 bp Gene: pfam01930:cas4 Type: Type-I Location: 198376-198927 bp Gene: cd09722:cas1 Type: universal Location: 198930-199910 bp Gene: cd09725:cas2 Type: universal Location: 199913-200179 bp CRISPR array Location: 200363-200852 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 200363-200852 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 200363-200852 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADAR010000006.1 Clostridioides difficile strain clo41 genome assembly, contig: ERS080206SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 257986 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17777-19454 bp 2 Locus 2: 193038-194376 bp Zoom in on locus 1 x26 Zoom in on locus 2 x21 CRISPR array Location: 17777-19454 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 17777-19454 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 193038-194376 bp Num of repeats: 21 Spacers: s26-s45 CRISPR array Location: 193038-194376 bp Num of repeats: 21 Spacers: s26-s45 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17777-19454 bp]: array | spacers
           [Locus range 193038-194376 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADAR010000010.1 Clostridioides difficile strain clo41 genome assembly, contig: ERS080206SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 149779 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11135-12085 bp Zoom in on locus 1 x15 CRISPR array Location: 11135-12085 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 11135-12085 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11135-12085 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADAR010000001.1 Clostridioides difficile strain clo41 genome assembly, contig: ERS080206SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 629429 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2886-3634 bp 2 Locus 2: 376436-376727 bp Zoom in on locus 1 x12 Zoom in on locus 2 x5 CRISPR array Location: 2886-3634 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 2886-3634 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 376436-376727 bp Num of repeats: 5 Spacers: s12-s15 CRISPR array Location: 376436-376727 bp Num of repeats: 5 Spacers: s12-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2886-3634 bp]: array | spacers
           [Locus range 376436-376727 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAADAR010000002.1 Clostridioides difficile strain clo41 genome assembly, contig: ERS080206SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 482037 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 160372-168718 bp 2 Locus 2: 242001-242496 bp Zoom in on locus 1 Zoom in on locus 2 x8 Gene: cd09641:cas3HD Type: Type-I Location: 160372-162780 bp Gene: cd09693:cas5 Type: Type-I Location: 162807-163604 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 163620-164636 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 164656-166131 bp Gene: pfam01881:cas6 Type: other Location: 166136-166873 bp Gene: unk Type: unknown Location: 166974-167150 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 167609-168718 bp CRISPR array Location: 242001-242496 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 242001-242496 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 242001-242496 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)