CRISPRone

CRISPRone report for GCA_900688315.1_7614_7_38

♦ Seq 1: CAADAS010000008.1 Clostridioides difficile strain clo40 genome assembly, contig: ERS080205SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 191183 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 172874-173428 bp Zoom in on locus 1 x9 CRISPR array Location: 172874-173428 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 172874-173428 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 172874-173428 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADAS010000002.1 Clostridioides difficile strain clo40 genome assembly, contig: ERS080205SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 364200 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2910-3396 bp 2 Locus 2: 351916-352275 bp Zoom in on locus 1 x8 Zoom in on locus 2 x6 CRISPR array Location: 2910-3396 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 2910-3396 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 351916-352275 bp Num of repeats: 6 Spacers: s8-s12 CRISPR array Location: 351916-352275 bp Num of repeats: 6 Spacers: s8-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2910-3396 bp]: array | spacers
           [Locus range 351916-352275 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADAS010000001.1 Clostridioides difficile strain clo40 genome assembly, contig: ERS080205SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 828856 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 367431-367525 bp 2 Locus 2: 580760-591893 bp Zoom in on locus 1 x2 Zoom in on locus 2 x25 CRISPR array Location: 367431-367525 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 367431-367525 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 580760-581674 bp Gene: pfam01881:cas6 Type: other Location: 581695-582489 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 582495-584345 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 584347-585261 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 585263-585964 bp Gene: cd09641:cas3HD Type: Type-I Location: 585975-588296 bp Gene: pfam01930:cas4 Type: Type-I Location: 588311-588862 bp Gene: cd09722:cas1 Type: universal Location: 588865-589845 bp Gene: cd09725:cas2 Type: universal Location: 589848-590114 bp CRISPR array Location: 590298-591893 bp Num of repeats: 25 Spacers: s2-s25 CRISPR array Location: 590298-591893 bp Num of repeats: 25 Spacers: s2-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 367431-367525 bp]: array | spacers
           [Locus range 590298-591893 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADAS010000007.1 Clostridioides difficile strain clo40 genome assembly, contig: ERS080205SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 216265 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90928-91683 bp Zoom in on locus 1 x12 CRISPR array Location: 90928-91683 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 90928-91683 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90928-91683 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADAS010000018.1 Clostridioides difficile strain clo40 genome assembly, contig: ERS080205SCcontig000018, whole genome shotgun sequence

⇒Summary: seq-len = 67567 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3487-3911 bp Zoom in on locus 1 x7 CRISPR array Location: 3487-3911 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 3487-3911 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3487-3911 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADAS010000025.1 Clostridioides difficile strain clo40 genome assembly, contig: ERS080205SCcontig000025, whole genome shotgun sequence

⇒Summary: seq-len = 14315 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5150-5511 bp Zoom in on locus 1 x6 CRISPR array Location: 5150-5511 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 5150-5511 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5150-5511 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAADAS010000003.1 Clostridioides difficile strain clo40 genome assembly, contig: ERS080205SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 286544 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 160237-168558 bp 2 Locus 2: 241838-241931 bp Zoom in on locus 1 Zoom in on locus 2 x2 Gene: cd09641:cas3HD Type: Type-I Location: 160237-162645 bp Gene: cd09693:cas5 Type: Type-I Location: 162672-163469 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 163485-164501 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 164521-165996 bp Gene: pfam01881:cas6 Type: other Location: 166001-166738 bp Gene: unk Type: unknown Location: 166839-167015 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 167449-168558 bp CRISPR array Location: 241838-241931 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 241838-241931 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 241838-241931 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)