CRISPRone

CRISPRone report for GCA_900688505.1_8080_1_23

♦ Seq 1: CAADBF010000011.1 Clostridioides difficile strain 078GUE035 genome assembly, contig: ERS138121SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 140798 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61744-73397 bp Zoom in on locus 1 x40 Gene: cd09725:cas2 Type: universal Location: 61744-62034 bp Gene: cd09722:cas1 Type: universal Location: 62245-63252 bp Gene: pfam01930:cas4 Type: Type-I Location: 63278-63772 bp CRISPR array Location: 63857-66455 bp Num of repeats: 40 Spacers: s1-s39 CRISPR array Location: 63857-66455 bp Num of repeats: 40 Spacers: s1-s39 Gene: unk Type: unknown Location: 64480-64608 bp Gene: cd09641:cas3HD Type: Type-I Location: 66645-69203 bp Gene: cd09693:cas5 Type: Type-I Location: 69227-69967 bp Gene: pfam05107:cas7b Type: Type-I Location: 69969-70958 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 70951-72690 bp Gene: cd09652:cas6 Type: other Location: 72702-73397 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 63857-66455 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADBF010000003.1 Clostridioides difficile strain 078GUE035 genome assembly, contig: ERS138121SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 258502 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97940-108893 bp 2 Locus 2: 161496-169823 bp Zoom in on locus 1 Zoom in on locus 2 Gene: cd06127:DEDDh Type: Type-I Location: 97940-98446 bp Gene: unk Type: unknown Location: 98605-99273 bp Gene: unk Type: unknown Location: 99686-100192 bp Gene: cd06127:DEDDh Type: Type-I Location: 100556-101593 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 108408-108893 bp Gene: cd09641:cas3HD Type: Type-I Location: 161496-163904 bp Gene: cd09693:cas5 Type: Type-I Location: 163931-164728 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 164744-165757 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 165776-167242 bp Gene: pfam01881:cas6 Type: other Location: 167247-167984 bp Gene: unk Type: unknown Location: 168085-168261 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 168714-169823 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADBF010000002.1 Clostridioides difficile strain 078GUE035 genome assembly, contig: ERS138121SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 294028 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 189265-189892 bp Zoom in on locus 1 x10 CRISPR array Location: 189265-189892 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 189265-189892 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 189265-189892 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADBF010000001.1 Clostridioides difficile strain 078GUE035 genome assembly, contig: ERS138121SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 323722 bp; # of CRISPR array = 2; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45901-46715 bp 2 Locus 2: 84217-96462 bp Zoom in on locus 1 x13 Zoom in on locus 2 x43 CRISPR array Location: 45901-46715 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 45901-46715 bp Num of repeats: 13 Spacers: s1-s12 Gene: COG0640:csa3 Type: Subtype-I-A Location: 84217-84594 bp Gene: cd09718:cas1 Type: universal Location: 84606-86261 bp CRISPR array Location: 93663-96462 bp Num of repeats: 43 Spacers: s13-s54 CRISPR array Location: 93663-96462 bp Num of repeats: 43 Spacers: s13-s54 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 45901-46715 bp]: array | spacers
           [Locus range 93663-96462 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADBF010000009.1 Clostridioides difficile strain 078GUE035 genome assembly, contig: ERS138121SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 147302 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125789-137487 bp Zoom in on locus 1 x33 CRISPR array Location: 125789-127910 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 125789-127910 bp Num of repeats: 33 Spacers: s1-s32 Gene: cd09725:cas2 Type: universal Location: 128094-128360 bp Gene: cd09722:cas1 Type: universal Location: 128363-129343 bp Gene: pfam01930:cas4 Type: Type-I Location: 129346-129864 bp Gene: COG1203:cas3 Type: Type-I Location: 129912-132233 bp Gene: cd09693:cas5 Type: Type-I Location: 132244-132945 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 132947-133861 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 133863-135713 bp Gene: pfam01881:cas6 Type: other Location: 135719-136456 bp Gene: pfam13280:WYL Type: other Location: 136534-137487 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 125789-127910 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADBF010000021.1 Clostridioides difficile strain 078GUE035 genome assembly, contig: ERS138121SCcontig000021, whole genome shotgun sequence

⇒Summary: seq-len = 76062 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1602-2751 bp Zoom in on locus 1 x18 CRISPR array Location: 1602-2751 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 1602-2751 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1602-2751 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)