CRISPRone

CRISPRone report for GCA_900688665.1_7614_7_48

♦ Seq 1: CAADAY010000001.1 Clostridioides difficile strain lsh11 genome assembly, contig: ERS080215SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 504844 bp; # of CRISPR array = 2; # of cas gene = 14  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 26652-33972 bp 2 Locus 2: 239903-251639 bp Zoom in on locus 1 x22 Zoom in on locus 2 x34 Gene: cd09693:cas5 Type: Type-I Location: 26652-27299 bp Gene: pfam01881:cas6 Type: other Location: 27290-28054 bp Gene: cd09754:cas8b2 Type: Subtype-I-B Location: 28056-29222 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 29243-30313 bp Gene: COG1203:cas3 Type: Type-I Location: 30324-32309 bp CRISPR array Location: 32562-33972 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 32562-33972 bp Num of repeats: 22 Spacers: s1-s21 Gene: pfam13280:WYL Type: other Location: 239903-240790 bp Gene: pfam01881:cas6 Type: other Location: 240868-241605 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 241611-243488 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 243490-244404 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 244406-245107 bp Gene: cd09641:cas3HD Type: Type-I Location: 245118-247439 bp Gene: pfam01930:cas4 Type: Type-I Location: 247454-248005 bp Gene: cd09722:cas1 Type: universal Location: 248008-248988 bp Gene: cd09725:cas2 Type: universal Location: 248991-249257 bp CRISPR array Location: 249441-251639 bp Num of repeats: 34 Spacers: s22-s54 CRISPR array Location: 249441-251639 bp Num of repeats: 34 Spacers: s22-s54 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 32562-33972 bp]: array | spacers
           [Locus range 249441-251639 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADAY010000002.1 Clostridioides difficile strain lsh11 genome assembly, contig: ERS080215SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 499657 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 69169-77487 bp 2 Locus 2: 242851-244205 bp Zoom in on locus 1 Zoom in on locus 2 x21 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 69169-70278 bp Gene: unk Type: unknown Location: 70712-70888 bp Gene: pfam01881:cas6 Type: other Location: 70989-71726 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 71731-73206 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 73226-74239 bp Gene: cd09693:cas5 Type: Type-I Location: 74255-75052 bp Gene: cd09641:cas3HD Type: Type-I Location: 75079-77487 bp CRISPR array Location: 242851-244205 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 242851-244205 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 242851-244205 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADAY010000019.1 Clostridioides difficile strain lsh11 genome assembly, contig: ERS080215SCcontig000019, whole genome shotgun sequence

⇒Summary: seq-len = 63546 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45260-45620 bp Zoom in on locus 1 x6 CRISPR array Location: 45260-45620 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 45260-45620 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 45260-45620 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADAY010000006.1 Clostridioides difficile strain lsh11 genome assembly, contig: ERS080215SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 231546 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 34025-34316 bp 2 Locus 2: 172957-174577 bp Zoom in on locus 1 x5 Zoom in on locus 2 x25 CRISPR array Location: 34025-34316 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 34025-34316 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 172957-174577 bp Num of repeats: 25 Spacers: s5-s28 CRISPR array Location: 172957-174577 bp Num of repeats: 25 Spacers: s5-s28 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 34025-34316 bp]: array | spacers
           [Locus range 172957-174577 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADAY010000008.1 Clostridioides difficile strain lsh11 genome assembly, contig: ERS080215SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 190336 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91044-92326 bp Zoom in on locus 1 x20 CRISPR array Location: 91044-92326 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 91044-92326 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91044-92326 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADAY010000003.1 Clostridioides difficile strain lsh11 genome assembly, contig: ERS080215SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 312017 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 120783-121673 bp Zoom in on locus 1 x14 CRISPR array Location: 120783-121673 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 120783-121673 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 120783-121673 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAADAY010000013.1 Clostridioides difficile strain lsh11 genome assembly, contig: ERS080215SCcontig000013, whole genome shotgun sequence

⇒Summary: seq-len = 97063 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5199-5359 bp Zoom in on locus 1 x3 CRISPR array Location: 5199-5359 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 5199-5359 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5199-5359 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: CAADAY010000012.1 Clostridioides difficile strain lsh11 genome assembly, contig: ERS080215SCcontig000012, whole genome shotgun sequence

⇒Summary: seq-len = 106898 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4087-4841 bp Zoom in on locus 1 x12 CRISPR array Location: 4087-4841 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 4087-4841 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4087-4841 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)