CRISPRone

CRISPRone report for GCA_900688705.1_8080_1_16

♦ Seq 1: CAADBA010000012.1 Clostridioides difficile strain 078GUE028 genome assembly, contig: ERS138114SCcontig000012, whole genome shotgun sequence

⇒Summary: seq-len = 140785 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 67402-79055 bp Zoom in on locus 1 x40 Gene: cd09652:cas6 Type: other Location: 67402-68097 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 68109-69848 bp Gene: pfam05107:cas7b Type: Type-I Location: 69841-70830 bp Gene: cd09693:cas5 Type: Type-I Location: 70832-71572 bp Gene: cd09641:cas3HD Type: Type-I Location: 71596-74154 bp CRISPR array Location: 74344-76943 bp Num of repeats: 40 Spacers: s1-s39 CRISPR array Location: 74344-76943 bp Num of repeats: 40 Spacers: s1-s39 Gene: pfam01930:cas4 Type: Type-I Location: 77027-77521 bp Gene: cd09722:cas1 Type: universal Location: 77547-78554 bp Gene: cd09725:cas2 Type: universal Location: 78765-79055 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 74344-76943 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADBA010000010.1 Clostridioides difficile strain 078GUE028 genome assembly, contig: ERS138114SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 147189 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125741-137374 bp Zoom in on locus 1 x32 CRISPR array Location: 125741-127797 bp Num of repeats: 32 Spacers: s1-s31 CRISPR array Location: 125741-127797 bp Num of repeats: 32 Spacers: s1-s31 Gene: cd09725:cas2 Type: universal Location: 127981-128247 bp Gene: cd09722:cas1 Type: universal Location: 128250-129230 bp Gene: pfam01930:cas4 Type: Type-I Location: 129233-129751 bp Gene: COG1203:cas3 Type: Type-I Location: 129799-132120 bp Gene: cd09693:cas5 Type: Type-I Location: 132131-132832 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 132834-133748 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 133750-135600 bp Gene: pfam01881:cas6 Type: other Location: 135606-136343 bp Gene: pfam13280:WYL Type: other Location: 136421-137374 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 125741-127797 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADBA010000003.1 Clostridioides difficile strain 078GUE028 genome assembly, contig: ERS138114SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 258479 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97918-108871 bp 2 Locus 2: 161473-169800 bp Zoom in on locus 1 Zoom in on locus 2 Gene: cd06127:DEDDh Type: Type-I Location: 97918-98424 bp Gene: unk Type: unknown Location: 98583-99251 bp Gene: unk Type: unknown Location: 99664-100170 bp Gene: cd06127:DEDDh Type: Type-I Location: 100534-101571 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 108386-108871 bp Gene: cd09641:cas3HD Type: Type-I Location: 161473-163881 bp Gene: cd09693:cas5 Type: Type-I Location: 163908-164705 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 164721-165734 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 165753-167219 bp Gene: pfam01881:cas6 Type: other Location: 167224-167961 bp Gene: unk Type: unknown Location: 168062-168238 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 168691-169800 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADBA010000020.1 Clostridioides difficile strain 078GUE028 genome assembly, contig: ERS138114SCcontig000020, whole genome shotgun sequence

⇒Summary: seq-len = 75978 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1584-2733 bp Zoom in on locus 1 x18 CRISPR array Location: 1584-2733 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 1584-2733 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1584-2733 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADBA010000002.1 Clostridioides difficile strain 078GUE028 genome assembly, contig: ERS138114SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 295294 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 104083-104709 bp Zoom in on locus 1 x10 CRISPR array Location: 104083-104709 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 104083-104709 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 104083-104709 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADBA010000001.1 Clostridioides difficile strain 078GUE028 genome assembly, contig: ERS138114SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 323776 bp; # of CRISPR array = 2; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45889-46703 bp 2 Locus 2: 84205-96516 bp Zoom in on locus 1 x13 Zoom in on locus 2 x44 CRISPR array Location: 45889-46703 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 45889-46703 bp Num of repeats: 13 Spacers: s1-s12 Gene: COG0640:csa3 Type: Subtype-I-A Location: 84205-84582 bp Gene: cd09718:cas1 Type: universal Location: 84594-86249 bp CRISPR array Location: 93651-96516 bp Num of repeats: 44 Spacers: s13-s55 CRISPR array Location: 93651-96516 bp Num of repeats: 44 Spacers: s13-s55 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 45889-46703 bp]: array | spacers
           [Locus range 93651-96516 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)