CRISPRone

CRISPRone report for GCA_900688715.1_8080_1_38

♦ Seq 1: CAADBB010000010.1 Clostridioides difficile strain 078LVP007 genome assembly, contig: ERS138136SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 147254 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125741-137439 bp Zoom in on locus 1 x33 CRISPR array Location: 125741-127862 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 125741-127862 bp Num of repeats: 33 Spacers: s1-s32 Gene: cd09725:cas2 Type: universal Location: 128046-128312 bp Gene: cd09722:cas1 Type: universal Location: 128315-129295 bp Gene: pfam01930:cas4 Type: Type-I Location: 129298-129816 bp Gene: COG1203:cas3 Type: Type-I Location: 129864-132185 bp Gene: cd09693:cas5 Type: Type-I Location: 132196-132897 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 132899-133813 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 133815-135665 bp Gene: pfam01881:cas6 Type: other Location: 135671-136408 bp Gene: pfam13280:WYL Type: other Location: 136486-137439 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 125741-127862 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADBB010000001.1 Clostridioides difficile strain 078LVP007 genome assembly, contig: ERS138136SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 428072 bp; # of CRISPR array = 2; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45876-46690 bp 2 Locus 2: 84192-96503 bp Zoom in on locus 1 x13 Zoom in on locus 2 x44 CRISPR array Location: 45876-46690 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 45876-46690 bp Num of repeats: 13 Spacers: s1-s12 Gene: COG0640:csa3 Type: Subtype-I-A Location: 84192-84569 bp Gene: cd09718:cas1 Type: universal Location: 84581-86236 bp CRISPR array Location: 93638-96503 bp Num of repeats: 44 Spacers: s13-s55 CRISPR array Location: 93638-96503 bp Num of repeats: 44 Spacers: s13-s55 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 45876-46690 bp]: array | spacers
           [Locus range 93638-96503 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADBB010000003.1 Clostridioides difficile strain 078LVP007 genome assembly, contig: ERS138136SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 258291 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 88680-97007 bp 2 Locus 2: 149484-160437 bp Zoom in on locus 1 Zoom in on locus 2 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 88680-89789 bp Gene: unk Type: unknown Location: 90242-90418 bp Gene: pfam01881:cas6 Type: other Location: 90519-91256 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 91261-92727 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 92746-93759 bp Gene: cd09693:cas5 Type: Type-I Location: 93775-94572 bp Gene: cd09641:cas3HD Type: Type-I Location: 94599-97007 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 149484-149969 bp Gene: cd06127:DEDDh Type: Type-I Location: 156784-157821 bp Gene: unk Type: unknown Location: 158185-158691 bp Gene: unk Type: unknown Location: 159104-159772 bp Gene: cd06127:DEDDh Type: Type-I Location: 159931-160437 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADBB010000002.1 Clostridioides difficile strain 078LVP007 genome assembly, contig: ERS138136SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 295696 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 104484-105110 bp Zoom in on locus 1 x10 CRISPR array Location: 104484-105110 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 104484-105110 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 104484-105110 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADBB010000012.1 Clostridioides difficile strain 078LVP007 genome assembly, contig: ERS138136SCcontig000012, whole genome shotgun sequence

⇒Summary: seq-len = 140783 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61729-73382 bp Zoom in on locus 1 x40 Gene: cd09725:cas2 Type: universal Location: 61729-62019 bp Gene: cd09722:cas1 Type: universal Location: 62230-63237 bp Gene: pfam01930:cas4 Type: Type-I Location: 63263-63757 bp CRISPR array Location: 63842-66440 bp Num of repeats: 40 Spacers: s1-s39 CRISPR array Location: 63842-66440 bp Num of repeats: 40 Spacers: s1-s39 Gene: unk Type: unknown Location: 64465-64593 bp Gene: cd09641:cas3HD Type: Type-I Location: 66630-69188 bp Gene: cd09693:cas5 Type: Type-I Location: 69212-69952 bp Gene: pfam05107:cas7b Type: Type-I Location: 69954-70943 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 70936-72675 bp Gene: cd09652:cas6 Type: other Location: 72687-73382 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 63842-66440 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADBB010000020.1 Clostridioides difficile strain 078LVP007 genome assembly, contig: ERS138136SCcontig000020, whole genome shotgun sequence

⇒Summary: seq-len = 75996 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1602-2751 bp Zoom in on locus 1 x18 CRISPR array Location: 1602-2751 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 1602-2751 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1602-2751 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)