CRISPRone

CRISPRone report for GCA_900688875.1_8080_1_54

♦ Seq 1: CAADBJ010000003.1 Clostridioides difficile strain 078LVP023 genome assembly, contig: ERS138152SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 258416 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 88679-97006 bp 2 Locus 2: 149609-160562 bp Zoom in on locus 1 Zoom in on locus 2 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 88679-89788 bp Gene: unk Type: unknown Location: 90241-90417 bp Gene: pfam01881:cas6 Type: other Location: 90518-91255 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 91260-92726 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 92745-93758 bp Gene: cd09693:cas5 Type: Type-I Location: 93774-94571 bp Gene: cd09641:cas3HD Type: Type-I Location: 94598-97006 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 149609-150094 bp Gene: cd06127:DEDDh Type: Type-I Location: 156909-157946 bp Gene: unk Type: unknown Location: 158310-158816 bp Gene: unk Type: unknown Location: 159229-159897 bp Gene: cd06127:DEDDh Type: Type-I Location: 160056-160562 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADBJ010000001.1 Clostridioides difficile strain 078LVP023 genome assembly, contig: ERS138152SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 323674 bp; # of CRISPR array = 2; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45852-46601 bp 2 Locus 2: 84103-96414 bp Zoom in on locus 1 x12 Zoom in on locus 2 x44 CRISPR array Location: 45852-46601 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 45852-46601 bp Num of repeats: 12 Spacers: s1-s11 Gene: COG0640:csa3 Type: Subtype-I-A Location: 84103-84480 bp Gene: cd09718:cas1 Type: universal Location: 84492-86147 bp CRISPR array Location: 93549-96414 bp Num of repeats: 44 Spacers: s12-s54 CRISPR array Location: 93549-96414 bp Num of repeats: 44 Spacers: s12-s54 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 45852-46601 bp]: array | spacers
           [Locus range 93549-96414 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADBJ010000009.1 Clostridioides difficile strain 078LVP023 genome assembly, contig: ERS138152SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 147254 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9816-21515 bp Zoom in on locus 1 x33 Gene: pfam13280:WYL Type: other Location: 9816-10769 bp Gene: pfam01881:cas6 Type: other Location: 10847-11584 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 11590-13440 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 13442-14356 bp Gene: cd09693:cas5 Type: Type-I Location: 14358-15059 bp Gene: COG1203:cas3 Type: Type-I Location: 15070-17391 bp Gene: pfam01930:cas4 Type: Type-I Location: 17406-17957 bp Gene: cd09722:cas1 Type: universal Location: 17960-18940 bp Gene: cd09725:cas2 Type: universal Location: 18943-19209 bp CRISPR array Location: 19393-21515 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 19393-21515 bp Num of repeats: 33 Spacers: s1-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19393-21515 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADBJ010000011.1 Clostridioides difficile strain 078LVP023 genome assembly, contig: ERS138152SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 140779 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61725-73378 bp Zoom in on locus 1 x40 Gene: cd09725:cas2 Type: universal Location: 61725-62015 bp Gene: cd09722:cas1 Type: universal Location: 62226-63233 bp Gene: pfam01930:cas4 Type: Type-I Location: 63259-63753 bp CRISPR array Location: 63838-66436 bp Num of repeats: 40 Spacers: s1-s39 CRISPR array Location: 63838-66436 bp Num of repeats: 40 Spacers: s1-s39 Gene: unk Type: unknown Location: 64461-64589 bp Gene: cd09641:cas3HD Type: Type-I Location: 66626-69184 bp Gene: cd09693:cas5 Type: Type-I Location: 69208-69948 bp Gene: pfam05107:cas7b Type: Type-I Location: 69950-70939 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 70932-72671 bp Gene: cd09652:cas6 Type: other Location: 72683-73378 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 63838-66436 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADBJ010000002.1 Clostridioides difficile strain 078LVP023 genome assembly, contig: ERS138152SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 295266 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190587-191214 bp Zoom in on locus 1 x10 CRISPR array Location: 190587-191214 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 190587-191214 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 190587-191214 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADBJ010000021.1 Clostridioides difficile strain 078LVP023 genome assembly, contig: ERS138152SCcontig000021, whole genome shotgun sequence

⇒Summary: seq-len = 75996 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1602-2751 bp Zoom in on locus 1 x18 CRISPR array Location: 1602-2751 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 1602-2751 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1602-2751 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)