CRISPRone

CRISPRone report for GCA_900688925.1_8080_2_10

♦ Seq 1: CAADBM010000009.1 Clostridioides difficile strain 078NET010 genome assembly, contig: ERS138012SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 147254 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125741-137439 bp Zoom in on locus 1 x33 CRISPR array Location: 125741-127862 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 125741-127862 bp Num of repeats: 33 Spacers: s1-s32 Gene: cd09725:cas2 Type: universal Location: 128046-128312 bp Gene: cd09722:cas1 Type: universal Location: 128315-129295 bp Gene: pfam01930:cas4 Type: Type-I Location: 129298-129816 bp Gene: COG1203:cas3 Type: Type-I Location: 129864-132185 bp Gene: cd09693:cas5 Type: Type-I Location: 132196-132897 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 132899-133813 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 133815-135665 bp Gene: pfam01881:cas6 Type: other Location: 135671-136408 bp Gene: pfam13280:WYL Type: other Location: 136486-137439 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 125741-127862 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADBM010000003.1 Clostridioides difficile strain 078NET010 genome assembly, contig: ERS138012SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 258460 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 88680-97007 bp 2 Locus 2: 149610-160563 bp Zoom in on locus 1 Zoom in on locus 2 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 88680-89789 bp Gene: unk Type: unknown Location: 90242-90418 bp Gene: pfam01881:cas6 Type: other Location: 90519-91256 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 91261-92727 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 92746-93759 bp Gene: cd09693:cas5 Type: Type-I Location: 93775-94572 bp Gene: cd09641:cas3HD Type: Type-I Location: 94599-97007 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 149610-150095 bp Gene: cd06127:DEDDh Type: Type-I Location: 156910-157947 bp Gene: unk Type: unknown Location: 158311-158817 bp Gene: unk Type: unknown Location: 159230-159898 bp Gene: cd06127:DEDDh Type: Type-I Location: 160057-160563 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADBM010000022.1 Clostridioides difficile strain 078NET010 genome assembly, contig: ERS138012SCcontig000022, whole genome shotgun sequence

⇒Summary: seq-len = 76025 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1631-2780 bp Zoom in on locus 1 x18 CRISPR array Location: 1631-2780 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 1631-2780 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1631-2780 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADBM010000001.1 Clostridioides difficile strain 078NET010 genome assembly, contig: ERS138012SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 341685 bp; # of CRISPR array = 2; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 227262-239572 bp 2 Locus 2: 294985-295798 bp Zoom in on locus 1 x44 Zoom in on locus 2 x13 CRISPR array Location: 227262-230126 bp Num of repeats: 44 Spacers: s1-s43 CRISPR array Location: 227262-230126 bp Num of repeats: 44 Spacers: s1-s43 Gene: cd09718:cas1 Type: universal Location: 237528-239183 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 239195-239572 bp CRISPR array Location: 294985-295798 bp Num of repeats: 13 Spacers: s44-s55 CRISPR array Location: 294985-295798 bp Num of repeats: 13 Spacers: s44-s55 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 227262-230126 bp]: array | spacers
           [Locus range 294985-295798 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADBM010000002.1 Clostridioides difficile strain 078NET010 genome assembly, contig: ERS138012SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 295295 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190587-191214 bp Zoom in on locus 1 x10 CRISPR array Location: 190587-191214 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 190587-191214 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 190587-191214 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADBM010000011.1 Clostridioides difficile strain 078NET010 genome assembly, contig: ERS138012SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 140717 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61729-73316 bp Zoom in on locus 1 x39 Gene: cd09725:cas2 Type: universal Location: 61729-62019 bp Gene: cd09722:cas1 Type: universal Location: 62230-63237 bp Gene: pfam01930:cas4 Type: Type-I Location: 63263-63757 bp CRISPR array Location: 63842-66374 bp Num of repeats: 39 Spacers: s1-s38 CRISPR array Location: 63842-66374 bp Num of repeats: 39 Spacers: s1-s38 Gene: unk Type: unknown Location: 64465-64593 bp Gene: cd09641:cas3HD Type: Type-I Location: 66564-69122 bp Gene: cd09693:cas5 Type: Type-I Location: 69146-69886 bp Gene: pfam05107:cas7b Type: Type-I Location: 69888-70877 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 70870-72609 bp Gene: cd09652:cas6 Type: other Location: 72621-73316 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 63842-66374 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)