CRISPRone

CRISPRone report for GCA_900688965.1_8080_2_17

♦ Seq 1: CAADBO010000009.1 Clostridioides difficile strain 078NET017 genome assembly, contig: ERS138019SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 140777 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61723-73376 bp Zoom in on locus 1 x40 Gene: cd09725:cas2 Type: universal Location: 61723-62013 bp Gene: cd09722:cas1 Type: universal Location: 62224-63231 bp Gene: pfam01930:cas4 Type: Type-I Location: 63257-63751 bp CRISPR array Location: 63836-66434 bp Num of repeats: 40 Spacers: s1-s39 CRISPR array Location: 63836-66434 bp Num of repeats: 40 Spacers: s1-s39 Gene: unk Type: unknown Location: 64459-64587 bp Gene: cd09641:cas3HD Type: Type-I Location: 66624-69182 bp Gene: cd09693:cas5 Type: Type-I Location: 69206-69946 bp Gene: pfam05107:cas7b Type: Type-I Location: 69948-70937 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 70930-72669 bp Gene: cd09652:cas6 Type: other Location: 72681-73376 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 63836-66434 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADBO010000002.1 Clostridioides difficile strain 078NET017 genome assembly, contig: ERS138019SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 258417 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 88680-97007 bp 2 Locus 2: 149610-160563 bp Zoom in on locus 1 Zoom in on locus 2 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 88680-89789 bp Gene: unk Type: unknown Location: 90242-90418 bp Gene: pfam01881:cas6 Type: other Location: 90519-91256 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 91261-92727 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 92746-93759 bp Gene: cd09693:cas5 Type: Type-I Location: 93775-94572 bp Gene: cd09641:cas3HD Type: Type-I Location: 94599-97007 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 149610-150095 bp Gene: cd06127:DEDDh Type: Type-I Location: 156910-157947 bp Gene: unk Type: unknown Location: 158311-158817 bp Gene: unk Type: unknown Location: 159230-159898 bp Gene: cd06127:DEDDh Type: Type-I Location: 160057-160563 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADBO010000008.1 Clostridioides difficile strain 078NET017 genome assembly, contig: ERS138019SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 147254 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125741-137439 bp Zoom in on locus 1 x33 CRISPR array Location: 125741-127862 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 125741-127862 bp Num of repeats: 33 Spacers: s1-s32 Gene: cd09725:cas2 Type: universal Location: 128046-128312 bp Gene: cd09722:cas1 Type: universal Location: 128315-129295 bp Gene: pfam01930:cas4 Type: Type-I Location: 129298-129816 bp Gene: COG1203:cas3 Type: Type-I Location: 129864-132185 bp Gene: cd09693:cas5 Type: Type-I Location: 132196-132897 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 132899-133813 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 133815-135665 bp Gene: pfam01881:cas6 Type: other Location: 135671-136408 bp Gene: pfam13280:WYL Type: other Location: 136486-137439 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 125741-127862 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADBO010000003.1 Clostridioides difficile strain 078NET017 genome assembly, contig: ERS138019SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 205417 bp; # of CRISPR array = 2; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 109237-121481 bp 2 Locus 2: 158984-159602 bp Zoom in on locus 1 x43 Zoom in on locus 2 x10 CRISPR array Location: 109237-112035 bp Num of repeats: 43 Spacers: s1-s42 CRISPR array Location: 109237-112035 bp Num of repeats: 43 Spacers: s1-s42 Gene: cd09718:cas1 Type: universal Location: 119437-121092 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 121104-121481 bp CRISPR array Location: 158984-159602 bp Num of repeats: 10 Spacers: s43-s51 CRISPR array Location: 158984-159602 bp Num of repeats: 10 Spacers: s43-s51 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 109237-112035 bp]: array | spacers
           [Locus range 158984-159602 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADBO010000001.1 Clostridioides difficile strain 078NET017 genome assembly, contig: ERS138019SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 293812 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 104054-104680 bp Zoom in on locus 1 x10 CRISPR array Location: 104054-104680 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 104054-104680 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 104054-104680 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADBO010000020.1 Clostridioides difficile strain 078NET017 genome assembly, contig: ERS138019SCcontig000020, whole genome shotgun sequence

⇒Summary: seq-len = 76025 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 73247-74395 bp Zoom in on locus 1 x18 CRISPR array Location: 73247-74395 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 73247-74395 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 73247-74395 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)