CRISPRone

CRISPRone report for GCA_900689015.1_8080_2_11

♦ Seq 1: CAADBQ010000002.1 Clostridioides difficile strain 078NET011 genome assembly, contig: ERS138013SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 295295 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 104083-104709 bp Zoom in on locus 1 x10 CRISPR array Location: 104083-104709 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 104083-104709 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 104083-104709 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADBQ010000001.1 Clostridioides difficile strain 078NET011 genome assembly, contig: ERS138013SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 341697 bp; # of CRISPR array = 2; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45900-46714 bp 2 Locus 2: 102126-114437 bp Zoom in on locus 1 x13 Zoom in on locus 2 x44 CRISPR array Location: 45900-46714 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 45900-46714 bp Num of repeats: 13 Spacers: s1-s12 Gene: COG0640:csa3 Type: Subtype-I-A Location: 102126-102503 bp Gene: cd09718:cas1 Type: universal Location: 102515-104170 bp CRISPR array Location: 111572-114437 bp Num of repeats: 44 Spacers: s13-s55 CRISPR array Location: 111572-114437 bp Num of repeats: 44 Spacers: s13-s55 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 45900-46714 bp]: array | spacers
           [Locus range 111572-114437 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADBQ010000003.1 Clostridioides difficile strain 078NET011 genome assembly, contig: ERS138013SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 258494 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97932-108885 bp 2 Locus 2: 161488-169815 bp Zoom in on locus 1 Zoom in on locus 2 Gene: cd06127:DEDDh Type: Type-I Location: 97932-98438 bp Gene: unk Type: unknown Location: 98597-99265 bp Gene: unk Type: unknown Location: 99678-100184 bp Gene: cd06127:DEDDh Type: Type-I Location: 100548-101585 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 108400-108885 bp Gene: cd09641:cas3HD Type: Type-I Location: 161488-163896 bp Gene: cd09693:cas5 Type: Type-I Location: 163923-164720 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 164736-165749 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 165768-167234 bp Gene: pfam01881:cas6 Type: other Location: 167239-167976 bp Gene: unk Type: unknown Location: 168077-168253 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 168706-169815 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADBQ010000011.1 Clostridioides difficile strain 078NET011 genome assembly, contig: ERS138013SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 140723 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61735-73322 bp Zoom in on locus 1 x39 Gene: cd09725:cas2 Type: universal Location: 61735-62025 bp Gene: cd09722:cas1 Type: universal Location: 62236-63243 bp Gene: pfam01930:cas4 Type: Type-I Location: 63269-63763 bp CRISPR array Location: 63848-66380 bp Num of repeats: 39 Spacers: s1-s38 CRISPR array Location: 63848-66380 bp Num of repeats: 39 Spacers: s1-s38 Gene: unk Type: unknown Location: 64471-64599 bp Gene: cd09641:cas3HD Type: Type-I Location: 66570-69128 bp Gene: cd09693:cas5 Type: Type-I Location: 69152-69892 bp Gene: pfam05107:cas7b Type: Type-I Location: 69894-70883 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 70876-72615 bp Gene: cd09652:cas6 Type: other Location: 72627-73322 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 63848-66380 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADBQ010000022.1 Clostridioides difficile strain 078NET011 genome assembly, contig: ERS138013SCcontig000022, whole genome shotgun sequence

⇒Summary: seq-len = 75993 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 73244-74392 bp Zoom in on locus 1 x18 CRISPR array Location: 73244-74392 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 73244-74392 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 73244-74392 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADBQ010000009.1 Clostridioides difficile strain 078NET011 genome assembly, contig: ERS138013SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 147254 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9816-21515 bp Zoom in on locus 1 x33 Gene: pfam13280:WYL Type: other Location: 9816-10769 bp Gene: pfam01881:cas6 Type: other Location: 10847-11584 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 11590-13440 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 13442-14356 bp Gene: cd09693:cas5 Type: Type-I Location: 14358-15059 bp Gene: COG1203:cas3 Type: Type-I Location: 15070-17391 bp Gene: pfam01930:cas4 Type: Type-I Location: 17406-17957 bp Gene: cd09722:cas1 Type: universal Location: 17960-18940 bp Gene: cd09725:cas2 Type: universal Location: 18943-19209 bp CRISPR array Location: 19393-21515 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 19393-21515 bp Num of repeats: 33 Spacers: s1-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19393-21515 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)