CRISPRone

CRISPRone report for GCA_900689035.1_8080_2_14

♦ Seq 1: CAADBR010000010.1 Clostridioides difficile strain 078NET014 genome assembly, contig: ERS138016SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 140792 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61731-73384 bp Zoom in on locus 1 x40 Gene: cd09725:cas2 Type: universal Location: 61731-62021 bp Gene: cd09722:cas1 Type: universal Location: 62232-63239 bp Gene: pfam01930:cas4 Type: Type-I Location: 63265-63759 bp CRISPR array Location: 63844-66442 bp Num of repeats: 40 Spacers: s1-s39 CRISPR array Location: 63844-66442 bp Num of repeats: 40 Spacers: s1-s39 Gene: unk Type: unknown Location: 64467-64595 bp Gene: cd09641:cas3HD Type: Type-I Location: 66632-69190 bp Gene: cd09693:cas5 Type: Type-I Location: 69214-69954 bp Gene: pfam05107:cas7b Type: Type-I Location: 69956-70945 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 70938-72677 bp Gene: cd09652:cas6 Type: other Location: 72689-73384 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 63844-66442 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADBR010000015.1 Clostridioides difficile strain 078NET014 genome assembly, contig: ERS138016SCcontig000015, whole genome shotgun sequence

⇒Summary: seq-len = 110126 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 106884-107044 bp Zoom in on locus 1 x3 CRISPR array Location: 106884-107044 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 106884-107044 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 106884-107044 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADBR010000008.1 Clostridioides difficile strain 078NET014 genome assembly, contig: ERS138016SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 147261 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125741-137439 bp Zoom in on locus 1 x33 CRISPR array Location: 125741-127862 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 125741-127862 bp Num of repeats: 33 Spacers: s1-s32 Gene: cd09725:cas2 Type: universal Location: 128046-128312 bp Gene: cd09722:cas1 Type: universal Location: 128315-129295 bp Gene: pfam01930:cas4 Type: Type-I Location: 129298-129816 bp Gene: COG1203:cas3 Type: Type-I Location: 129864-132185 bp Gene: cd09693:cas5 Type: Type-I Location: 132196-132897 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 132899-133813 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 133815-135665 bp Gene: pfam01881:cas6 Type: other Location: 135671-136408 bp Gene: pfam13280:WYL Type: other Location: 136486-137439 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 125741-127862 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADBR010000021.1 Clostridioides difficile strain 078NET014 genome assembly, contig: ERS138016SCcontig000021, whole genome shotgun sequence

⇒Summary: seq-len = 76025 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 73247-74395 bp Zoom in on locus 1 x18 CRISPR array Location: 73247-74395 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 73247-74395 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 73247-74395 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADBR010000001.1 Clostridioides difficile strain 078NET014 genome assembly, contig: ERS138016SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 323783 bp; # of CRISPR array = 2; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 227269-239579 bp 2 Locus 2: 277082-277895 bp Zoom in on locus 1 x44 Zoom in on locus 2 x13 CRISPR array Location: 227269-230133 bp Num of repeats: 44 Spacers: s1-s43 CRISPR array Location: 227269-230133 bp Num of repeats: 44 Spacers: s1-s43 Gene: cd09718:cas1 Type: universal Location: 237535-239190 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 239202-239579 bp CRISPR array Location: 277082-277895 bp Num of repeats: 13 Spacers: s44-s55 CRISPR array Location: 277082-277895 bp Num of repeats: 13 Spacers: s44-s55 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 227269-230133 bp]: array | spacers
           [Locus range 277082-277895 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADBR010000002.1 Clostridioides difficile strain 078NET014 genome assembly, contig: ERS138016SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 313334 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 104083-104709 bp Zoom in on locus 1 x10 CRISPR array Location: 104083-104709 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 104083-104709 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 104083-104709 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAADBR010000003.1 Clostridioides difficile strain 078NET014 genome assembly, contig: ERS138016SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 258488 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 88687-97014 bp 2 Locus 2: 149617-160570 bp Zoom in on locus 1 Zoom in on locus 2 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 88687-89796 bp Gene: unk Type: unknown Location: 90249-90425 bp Gene: pfam01881:cas6 Type: other Location: 90526-91263 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 91268-92734 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 92753-93766 bp Gene: cd09693:cas5 Type: Type-I Location: 93782-94579 bp Gene: cd09641:cas3HD Type: Type-I Location: 94606-97014 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 149617-150102 bp Gene: cd06127:DEDDh Type: Type-I Location: 156917-157954 bp Gene: unk Type: unknown Location: 158318-158824 bp Gene: unk Type: unknown Location: 159237-159905 bp Gene: cd06127:DEDDh Type: Type-I Location: 160064-160570 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)