CRISPRone

CRISPRone report for GCA_900689055.1_8080_2_20

♦ Seq 1: CAADBS010000005.1 Clostridioides difficile strain 078NET020 genome assembly, contig: ERS138022SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 182130 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 67402-79055 bp Zoom in on locus 1 x40 Gene: cd09652:cas6 Type: other Location: 67402-68097 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 68109-69848 bp Gene: pfam05107:cas7b Type: Type-I Location: 69841-70830 bp Gene: cd09693:cas5 Type: Type-I Location: 70832-71572 bp Gene: cd09641:cas3HD Type: Type-I Location: 71596-74154 bp CRISPR array Location: 74344-76943 bp Num of repeats: 40 Spacers: s1-s39 CRISPR array Location: 74344-76943 bp Num of repeats: 40 Spacers: s1-s39 Gene: unk Type: unknown Location: 76191-76319 bp Gene: pfam01930:cas4 Type: Type-I Location: 77027-77521 bp Gene: cd09722:cas1 Type: universal Location: 77556-78554 bp Gene: cd09725:cas2 Type: universal Location: 78765-79055 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 74344-76943 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADBS010000019.1 Clostridioides difficile strain 078NET020 genome assembly, contig: ERS138022SCcontig000019, whole genome shotgun sequence

⇒Summary: seq-len = 76128 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1602-2883 bp Zoom in on locus 1 x20 CRISPR array Location: 1602-2883 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 1602-2883 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1602-2883 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADBS010000042.1 Clostridioides difficile strain 078NET020 genome assembly, contig: ERS138022SCcontig000042, whole genome shotgun sequence

⇒Summary: seq-len = 17699 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4947-5039 bp Zoom in on locus 1 x2 CRISPR array Location: 4947-5039 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 4947-5039 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4947-5039 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADBS010000001.1 Clostridioides difficile strain 078NET020 genome assembly, contig: ERS138022SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 300996 bp; # of CRISPR array = 2; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45817-46630 bp 2 Locus 2: 84132-96640 bp Zoom in on locus 1 x13 Zoom in on locus 2 x47 CRISPR array Location: 45817-46630 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 45817-46630 bp Num of repeats: 13 Spacers: s1-s12 Gene: COG0640:csa3 Type: Subtype-I-A Location: 84132-84509 bp Gene: cd09718:cas1 Type: universal Location: 84521-86176 bp CRISPR array Location: 93578-96640 bp Num of repeats: 47 Spacers: s13-s58 CRISPR array Location: 93578-96640 bp Num of repeats: 47 Spacers: s13-s58 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 45817-46630 bp]: array | spacers
           [Locus range 93578-96640 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADBS010000025.1 Clostridioides difficile strain 078NET020 genome assembly, contig: ERS138022SCcontig000025, whole genome shotgun sequence

⇒Summary: seq-len = 53185 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9816-21649 bp Zoom in on locus 1 x35 Gene: pfam13280:WYL Type: other Location: 9816-10769 bp Gene: pfam01881:cas6 Type: other Location: 10847-11584 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 11590-13440 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 13442-14356 bp Gene: cd09693:cas5 Type: Type-I Location: 14358-15059 bp Gene: COG1203:cas3 Type: Type-I Location: 15070-17391 bp Gene: pfam01930:cas4 Type: Type-I Location: 17406-17957 bp Gene: cd09722:cas1 Type: universal Location: 17960-18940 bp Gene: cd09725:cas2 Type: universal Location: 18943-19209 bp CRISPR array Location: 19393-21649 bp Num of repeats: 35 Spacers: s1-s34 CRISPR array Location: 19393-21649 bp Num of repeats: 35 Spacers: s1-s34 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19393-21649 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADBS010000047.1 Clostridioides difficile strain 078NET020 genome assembly, contig: ERS138022SCcontig000047, whole genome shotgun sequence

⇒Summary: seq-len = 12642 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10070-10230 bp Zoom in on locus 1 x3 CRISPR array Location: 10070-10230 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 10070-10230 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10070-10230 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAADBS010000003.1 Clostridioides difficile strain 078NET020 genome assembly, contig: ERS138022SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 258435 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 88680-97007 bp 2 Locus 2: 149610-160563 bp Zoom in on locus 1 Zoom in on locus 2 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 88680-89789 bp Gene: unk Type: unknown Location: 90242-90418 bp Gene: pfam01881:cas6 Type: other Location: 90519-91256 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 91261-92727 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 92746-93759 bp Gene: cd09693:cas5 Type: Type-I Location: 93775-94572 bp Gene: cd09641:cas3HD Type: Type-I Location: 94599-97007 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 149610-150095 bp Gene: cd06127:DEDDh Type: Type-I Location: 156910-157947 bp Gene: unk Type: unknown Location: 158311-158817 bp Gene: unk Type: unknown Location: 159230-159898 bp Gene: cd06127:DEDDh Type: Type-I Location: 160057-160563 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: CAADBS010000002.1 Clostridioides difficile strain 078NET020 genome assembly, contig: ERS138022SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 293877 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 104052-104745 bp Zoom in on locus 1 x11 CRISPR array Location: 104052-104745 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 104052-104745 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 104052-104745 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)