CRISPRone

CRISPRone report for GCA_900689405.1_8080_2_57

♦ Seq 1: CAADBT010000001.1 Clostridioides difficile strain 078NET057 genome assembly, contig: ERS138059SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 298913 bp; # of CRISPR array = 2; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 204392-214589 bp 2 Locus 2: 252091-253168 bp Zoom in on locus 1 x12 Zoom in on locus 2 x17 CRISPR array Location: 204392-205143 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 204392-205143 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09718:cas1 Type: universal Location: 212545-214200 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 214212-214589 bp CRISPR array Location: 252091-253168 bp Num of repeats: 17 Spacers: s12-s27 CRISPR array Location: 252091-253168 bp Num of repeats: 17 Spacers: s12-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 204392-205143 bp]: array | spacers
           [Locus range 252091-253168 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADBT010000011.1 Clostridioides difficile strain 078NET057 genome assembly, contig: ERS138059SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 138954 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 67409-77174 bp Zoom in on locus 1 x12 Gene: cd09652:cas6 Type: other Location: 67409-68104 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 68116-69855 bp Gene: pfam05107:cas7b Type: Type-I Location: 69848-70837 bp Gene: cd09693:cas5 Type: Type-I Location: 70839-71579 bp Gene: cd09641:cas3HD Type: Type-I Location: 71603-73426 bp Gene: COG1203:cas3 Type: Type-I Location: 73444-74160 bp CRISPR array Location: 74350-75104 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 74350-75104 bp Num of repeats: 12 Spacers: s1-s11 Gene: pfam01930:cas4 Type: Type-I Location: 75188-75682 bp Gene: cd09722:cas1 Type: universal Location: 75708-76715 bp Gene: cd09725:cas2 Type: universal Location: 76926-77174 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 74350-75104 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADBT010000022.1 Clostridioides difficile strain 078NET057 genome assembly, contig: ERS138059SCcontig000022, whole genome shotgun sequence

⇒Summary: seq-len = 76021 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1584-2799 bp Zoom in on locus 1 x19 CRISPR array Location: 1584-2799 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 1584-2799 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1584-2799 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADBT010000027.1 Clostridioides difficile strain 078NET057 genome assembly, contig: ERS138059SCcontig000027, whole genome shotgun sequence

⇒Summary: seq-len = 60154 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 39613-50339 bp Zoom in on locus 1 x18 CRISPR array Location: 39613-40762 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 39613-40762 bp Num of repeats: 18 Spacers: s1-s17 Gene: cd09725:cas2 Type: universal Location: 40946-41212 bp Gene: cd09722:cas1 Type: universal Location: 41215-42195 bp Gene: pfam01930:cas4 Type: Type-I Location: 42198-42716 bp Gene: COG1203:cas3 Type: Type-I Location: 42764-45085 bp Gene: cd09693:cas5 Type: Type-I Location: 45096-45560 bp Gene: cd09693:cas5 Type: Type-I Location: 45597-45797 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 45799-46713 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 46715-48565 bp Gene: pfam01881:cas6 Type: other Location: 48571-49308 bp Gene: pfam13280:WYL Type: other Location: 49386-50339 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 39613-40762 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADBT010000008.1 Clostridioides difficile strain 078NET057 genome assembly, contig: ERS138059SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 150463 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45703-46327 bp Zoom in on locus 1 x10 CRISPR array Location: 45703-46327 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 45703-46327 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 45703-46327 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADBT010000003.1 Clostridioides difficile strain 078NET057 genome assembly, contig: ERS138059SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 255888 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 95362-106315 bp 2 Locus 2: 158918-167245 bp Zoom in on locus 1 Zoom in on locus 2 Gene: cd06127:DEDDh Type: Type-I Location: 95362-95868 bp Gene: unk Type: unknown Location: 96027-96695 bp Gene: unk Type: unknown Location: 97108-97614 bp Gene: cd06127:DEDDh Type: Type-I Location: 97978-99015 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 105830-106315 bp Gene: cd09641:cas3HD Type: Type-I Location: 158918-161326 bp Gene: cd09693:cas5 Type: Type-I Location: 161353-162150 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 162166-163179 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 163198-164664 bp Gene: pfam01881:cas6 Type: other Location: 164669-165406 bp Gene: unk Type: unknown Location: 165507-165683 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 166136-167245 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAADBT010000020.1 Clostridioides difficile strain 078NET057 genome assembly, contig: ERS138059SCcontig000020, whole genome shotgun sequence

⇒Summary: seq-len = 82678 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18618-19737 bp Zoom in on locus 1 x3 x6 CRISPR array Location: 18618-18779 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 18618-18779 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 19378-19737 bp Num of repeats: 6 Spacers: s3-s7 CRISPR array Location: 19378-19737 bp Num of repeats: 6 Spacers: s3-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18618-18779 bp]: array | spacers
           [Locus range 19378-19737 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)