CRISPRone

CRISPRone report for GCA_900689445.1_8080_2_59

♦ Seq 1: CAADBV010000004.1 Clostridioides difficile strain 078NET060 genome assembly, contig: ERS138061SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 168570 bp; # of CRISPR array = 0; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 671-7159 bp 2 Locus 2: 59762-70715 bp Zoom in on locus 1 Zoom in on locus 2 Gene: pfam01881:cas6 Type: other Location: 671-1408 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1413-2879 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2898-3911 bp Gene: cd09693:cas5 Type: Type-I Location: 3927-4724 bp Gene: cd09641:cas3HD Type: Type-I Location: 4751-7159 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 59762-60247 bp Gene: cd06127:DEDDh Type: Type-I Location: 67062-68099 bp Gene: unk Type: unknown Location: 68463-68969 bp Gene: unk Type: unknown Location: 69382-70050 bp Gene: cd06127:DEDDh Type: Type-I Location: 70209-70715 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADBV010000009.1 Clostridioides difficile strain 078NET060 genome assembly, contig: ERS138061SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 147254 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125741-137439 bp Zoom in on locus 1 x33 CRISPR array Location: 125741-127862 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 125741-127862 bp Num of repeats: 33 Spacers: s1-s32 Gene: cd09725:cas2 Type: universal Location: 128046-128312 bp Gene: cd09722:cas1 Type: universal Location: 128315-129295 bp Gene: pfam01930:cas4 Type: Type-I Location: 129298-129816 bp Gene: COG1203:cas3 Type: Type-I Location: 129864-132185 bp Gene: cd09693:cas5 Type: Type-I Location: 132196-132897 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 132899-133813 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 133815-135665 bp Gene: pfam01881:cas6 Type: other Location: 135671-136408 bp Gene: pfam13280:WYL Type: other Location: 136486-137439 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 125741-127862 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADBV010000002.1 Clostridioides difficile strain 078NET060 genome assembly, contig: ERS138061SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 293941 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 104053-104679 bp Zoom in on locus 1 x10 CRISPR array Location: 104053-104679 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 104053-104679 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 104053-104679 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADBV010000021.1 Clostridioides difficile strain 078NET060 genome assembly, contig: ERS138061SCcontig000021, whole genome shotgun sequence

⇒Summary: seq-len = 75978 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1584-2733 bp Zoom in on locus 1 x18 CRISPR array Location: 1584-2733 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 1584-2733 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1584-2733 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADBV010000001.1 Clostridioides difficile strain 078NET060 genome assembly, contig: ERS138061SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 438474 bp; # of CRISPR array = 2; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 341942-354252 bp 2 Locus 2: 391755-392568 bp Zoom in on locus 1 x44 Zoom in on locus 2 x13 CRISPR array Location: 341942-344806 bp Num of repeats: 44 Spacers: s1-s43 CRISPR array Location: 341942-344806 bp Num of repeats: 44 Spacers: s1-s43 Gene: cd09718:cas1 Type: universal Location: 352208-353863 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 353875-354252 bp CRISPR array Location: 391755-392568 bp Num of repeats: 13 Spacers: s44-s55 CRISPR array Location: 391755-392568 bp Num of repeats: 13 Spacers: s44-s55 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 341942-344806 bp]: array | spacers
           [Locus range 391755-392568 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADBV010000011.1 Clostridioides difficile strain 078NET060 genome assembly, contig: ERS138061SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 140781 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61727-73380 bp Zoom in on locus 1 x40 Gene: cd09725:cas2 Type: universal Location: 61727-62017 bp Gene: cd09722:cas1 Type: universal Location: 62228-63235 bp Gene: pfam01930:cas4 Type: Type-I Location: 63261-63755 bp CRISPR array Location: 63840-66438 bp Num of repeats: 40 Spacers: s1-s39 CRISPR array Location: 63840-66438 bp Num of repeats: 40 Spacers: s1-s39 Gene: unk Type: unknown Location: 64463-64591 bp Gene: cd09641:cas3HD Type: Type-I Location: 66628-69186 bp Gene: cd09693:cas5 Type: Type-I Location: 69210-69950 bp Gene: pfam05107:cas7b Type: Type-I Location: 69952-70941 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 70934-72673 bp Gene: cd09652:cas6 Type: other Location: 72685-73380 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 63840-66438 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)