CRISPRone

CRISPRone report for GCA_900689605.1_8080_2_74

♦ Seq 1: CAADBW010000002.1 Clostridioides difficile strain 078NET075 genome assembly, contig: ERS138076SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 416303 bp; # of CRISPR array = 5; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17741-18893 bp 2 Locus 2: 109622-114554 bp 3 Locus 3: 249381-251588 bp Zoom in on locus 1 x18 Zoom in on locus 2 x5 x4 x16 Zoom in on locus 3 x34 CRISPR array Location: 17741-18893 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 17741-18893 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 109622-109914 bp Num of repeats: 5 Spacers: s18-s21 CRISPR array Location: 109622-109914 bp Num of repeats: 5 Spacers: s18-s21 CRISPR array Location: 111518-111742 bp Num of repeats: 4 Spacers: s22-s24 CRISPR array Location: 111518-111742 bp Num of repeats: 4 Spacers: s22-s24 CRISPR array Location: 113535-114554 bp Num of repeats: 16 Spacers: s25-s39 CRISPR array Location: 113535-114554 bp Num of repeats: 16 Spacers: s25-s39 CRISPR array Location: 249381-251588 bp Num of repeats: 34 Spacers: s40-s72 CRISPR array Location: 249381-251588 bp Num of repeats: 34 Spacers: s40-s72 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17741-18893 bp]: array | spacers
           [Locus range 109622-109914 bp]: array | spacers
           [Locus range 111518-111742 bp]: array | spacers
           [Locus range 113535-114554 bp]: array | spacers
           [Locus range 249381-251588 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADBW010000018.1 Clostridioides difficile strain 078NET075 genome assembly, contig: ERS138076SCcontig000018, whole genome shotgun sequence

⇒Summary: seq-len = 84172 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2974-3656 bp Zoom in on locus 1 x11 CRISPR array Location: 2974-3656 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 2974-3656 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2974-3656 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADBW010000004.1 Clostridioides difficile strain 078NET075 genome assembly, contig: ERS138076SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 286396 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44140-44565 bp 2 Locus 2: 117847-126165 bp Zoom in on locus 1 x7 Zoom in on locus 2 CRISPR array Location: 44140-44565 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 44140-44565 bp Num of repeats: 7 Spacers: s1-s6 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 117847-118956 bp Gene: unk Type: unknown Location: 119390-119566 bp Gene: pfam01881:cas6 Type: other Location: 119667-120404 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 120409-121884 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 121904-122917 bp Gene: cd09693:cas5 Type: Type-I Location: 122933-123730 bp Gene: cd09641:cas3HD Type: Type-I Location: 123757-126165 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44140-44565 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADBW010000009.1 Clostridioides difficile strain 078NET075 genome assembly, contig: ERS138076SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 215828 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90942-91765 bp Zoom in on locus 1 x13 CRISPR array Location: 90942-91765 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 90942-91765 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90942-91765 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADBW010000001.1 Clostridioides difficile strain 078NET075 genome assembly, contig: ERS138076SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 505875 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252311-263648 bp 2 Locus 2: 485895-485988 bp Zoom in on locus 1 x28 Zoom in on locus 2 x2 CRISPR array Location: 252311-254110 bp Num of repeats: 28 Spacers: s1-s27 CRISPR array Location: 252311-254110 bp Num of repeats: 28 Spacers: s1-s27 Gene: cd09725:cas2 Type: universal Location: 254294-254560 bp Gene: cd09722:cas1 Type: universal Location: 254563-255543 bp Gene: pfam01930:cas4 Type: Type-I Location: 255546-256064 bp Gene: COG1203:cas3 Type: Type-I Location: 256112-258433 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 258444-259145 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 259147-260061 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 260063-261913 bp Gene: pfam01881:cas6 Type: other Location: 261919-262713 bp Gene: pfam13280:WYL Type: other Location: 262734-263648 bp CRISPR array Location: 485895-485988 bp Num of repeats: 2 Spacers: s28-s28 CRISPR array Location: 485895-485988 bp Num of repeats: 2 Spacers: s28-s28 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252311-254110 bp]: array | spacers
           [Locus range 485895-485988 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADBW010000005.1 Clostridioides difficile strain 078NET075 genome assembly, contig: ERS138076SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 280332 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 189825-191173 bp Zoom in on locus 1 x21 CRISPR array Location: 189825-191173 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 189825-191173 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 189825-191173 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)