CRISPRone

CRISPRone report for GCA_900689655.1_8080_2_77

♦ Seq 1: CAADBX010000003.1 Clostridioides difficile strain 078NET078 genome assembly, contig: ERS138079SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 345275 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 95311-106269 bp 2 Locus 2: 157479-167202 bp 3 Locus 3: 246989-247345 bp Zoom in on locus 1 Zoom in on locus 2 Zoom in on locus 3 x6 Gene: cd06127:DEDDh Type: Type-I Location: 95311-95817 bp Gene: unk Type: unknown Location: 95976-96644 bp Gene: unk Type: unknown Location: 97057-97563 bp Gene: cd06127:DEDDh Type: Type-I Location: 97935-98972 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 105784-106269 bp Gene: cd09641:cas3HD Type: Type-I Location: 157479-159887 bp Gene: cd09693:cas5 Type: Type-I Location: 159914-160711 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 160727-161740 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 161760-163226 bp Gene: pfam01881:cas6 Type: other Location: 163231-163968 bp Gene: unk Type: unknown Location: 164282-164740 bp Gene: cas14:cas14 Type: Type-V Location: 164768-165940 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 166093-167202 bp CRISPR array Location: 246989-247345 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 246989-247345 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 246989-247345 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADBX010000001.1 Clostridioides difficile strain 078NET078 genome assembly, contig: ERS138079SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 529746 bp; # of CRISPR array = 7; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28710-28871 bp 2 Locus 2: 138130-138750 bp 3 Locus 3: 230303-234180 bp 4 Locus 4: 365220-365640 bp Zoom in on locus 1 x3 Zoom in on locus 2 x10 Zoom in on locus 3 x2 x6 x14 x2 Zoom in on locus 4 x7 CRISPR array Location: 28710-28871 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 28710-28871 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 138130-138750 bp Num of repeats: 10 Spacers: s3-s11 CRISPR array Location: 138130-138750 bp Num of repeats: 10 Spacers: s3-s11 CRISPR array Location: 230303-230396 bp Num of repeats: 2 Spacers: s12-s12 CRISPR array Location: 230303-230396 bp Num of repeats: 2 Spacers: s12-s12 CRISPR array Location: 230457-230815 bp Num of repeats: 6 Spacers: s13-s17 CRISPR array Location: 230457-230815 bp Num of repeats: 6 Spacers: s13-s17 CRISPR array Location: 231417-232304 bp Num of repeats: 14 Spacers: s18-s30 CRISPR array Location: 231417-232304 bp Num of repeats: 14 Spacers: s18-s30 CRISPR array Location: 234085-234180 bp Num of repeats: 2 Spacers: s31-s31 CRISPR array Location: 234085-234180 bp Num of repeats: 2 Spacers: s31-s31 CRISPR array Location: 365220-365640 bp Num of repeats: 7 Spacers: s32-s37 CRISPR array Location: 365220-365640 bp Num of repeats: 7 Spacers: s32-s37 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 28710-28871 bp]: array | spacers
           [Locus range 138130-138750 bp]: array | spacers
           [Locus range 230303-230396 bp]: array | spacers
           [Locus range 230457-230815 bp]: array | spacers
           [Locus range 231417-232304 bp]: array | spacers
           [Locus range 234085-234180 bp]: array | spacers
           [Locus range 365220-365640 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADBX010000002.1 Clostridioides difficile strain 078NET078 genome assembly, contig: ERS138079SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 376601 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 194109-194204 bp Zoom in on locus 1 x2 CRISPR array Location: 194109-194204 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 194109-194204 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 194109-194204 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)