CRISPRone

CRISPRone report for GCA_900689705.1_8080_2_81

♦ Seq 1: CAADBY010000002.1 Clostridioides difficile strain 078NET082 genome assembly, contig: ERS138083SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 542692 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 498755-498848 bp Zoom in on locus 1 x2 CRISPR array Location: 498755-498848 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 498755-498848 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 498755-498848 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADBY010000003.1 Clostridioides difficile strain 078NET082 genome assembly, contig: ERS138083SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 516197 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 138353-138780 bp 2 Locus 2: 342314-342736 bp 3 Locus 3: 451170-451929 bp Zoom in on locus 1 x7 Zoom in on locus 2 x7 Zoom in on locus 3 x12 CRISPR array Location: 138353-138780 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 138353-138780 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 342314-342736 bp Num of repeats: 7 Spacers: s7-s12 CRISPR array Location: 342314-342736 bp Num of repeats: 7 Spacers: s7-s12 CRISPR array Location: 451170-451929 bp Num of repeats: 12 Spacers: s13-s23 CRISPR array Location: 451170-451929 bp Num of repeats: 12 Spacers: s13-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 138353-138780 bp]: array | spacers
           [Locus range 342314-342736 bp]: array | spacers
           [Locus range 451170-451929 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADBY010000023.1 Clostridioides difficile strain 078NET082 genome assembly, contig: ERS138083SCcontig000023, whole genome shotgun sequence

⇒Summary: seq-len = 16919 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6174-8149 bp Zoom in on locus 1 x9 x13 CRISPR array Location: 6174-6729 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 6174-6729 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 7331-8149 bp Num of repeats: 13 Spacers: s9-s20 CRISPR array Location: 7331-8149 bp Num of repeats: 13 Spacers: s9-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6174-6729 bp]: array | spacers
           [Locus range 7331-8149 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADBY010000001.1 Clostridioides difficile strain 078NET082 genome assembly, contig: ERS138083SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 703965 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 250083-250309 bp 2 Locus 2: 416066-423931 bp 3 Locus 3: 498152-498708 bp Zoom in on locus 1 x4 Zoom in on locus 2 Zoom in on locus 3 x9 CRISPR array Location: 250083-250309 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 250083-250309 bp Num of repeats: 4 Spacers: s1-s3 Gene: cd09641:cas3HD Type: Type-I Location: 416066-418474 bp Gene: cd09693:cas5 Type: Type-I Location: 418501-419298 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 419314-420327 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 420347-421822 bp Gene: pfam01881:cas6 Type: other Location: 421827-422564 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 422822-423931 bp CRISPR array Location: 498152-498708 bp Num of repeats: 9 Spacers: s4-s11 CRISPR array Location: 498152-498708 bp Num of repeats: 9 Spacers: s4-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 250083-250309 bp]: array | spacers
           [Locus range 498152-498708 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADBY010000006.1 Clostridioides difficile strain 078NET082 genome assembly, contig: ERS138083SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 228925 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 139177-139402 bp Zoom in on locus 1 x4 CRISPR array Location: 139177-139402 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 139177-139402 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 139177-139402 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADBY010000007.1 Clostridioides difficile strain 078NET082 genome assembly, contig: ERS138083SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 163912 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 48151-49759 bp Zoom in on locus 1 x25 CRISPR array Location: 48151-49759 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 48151-49759 bp Num of repeats: 25 Spacers: s1-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 48151-49759 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)