CRISPRone

CRISPRone report for GCA_900689735.1_8080_2_84

♦ Seq 1: CAADBZ010000013.1 Clostridioides difficile strain 078NET085 genome assembly, contig: ERS138086SCcontig000013, whole genome shotgun sequence

⇒Summary: seq-len = 110692 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 48301-50040 bp Zoom in on locus 1 x27 CRISPR array Location: 48301-50040 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 48301-50040 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 48301-50040 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADBZ010000003.1 Clostridioides difficile strain 078NET085 genome assembly, contig: ERS138086SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 537687 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 77653-78081 bp 2 Locus 2: 194431-194852 bp 3 Locus 3: 398387-398813 bp Zoom in on locus 1 x7 Zoom in on locus 2 x7 Zoom in on locus 3 x7 CRISPR array Location: 77653-78081 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 77653-78081 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 194431-194852 bp Num of repeats: 7 Spacers: s7-s12 CRISPR array Location: 194431-194852 bp Num of repeats: 7 Spacers: s7-s12 CRISPR array Location: 398387-398813 bp Num of repeats: 7 Spacers: s13-s18 CRISPR array Location: 398387-398813 bp Num of repeats: 7 Spacers: s13-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 77653-78081 bp]: array | spacers
           [Locus range 194431-194852 bp]: array | spacers
           [Locus range 398387-398813 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADBZ010000023.1 Clostridioides difficile strain 078NET085 genome assembly, contig: ERS138086SCcontig000023, whole genome shotgun sequence

⇒Summary: seq-len = 15997 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7846-9820 bp Zoom in on locus 1 x13 x9 CRISPR array Location: 7846-8663 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 7846-8663 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 9266-9820 bp Num of repeats: 9 Spacers: s13-s20 CRISPR array Location: 9266-9820 bp Num of repeats: 9 Spacers: s13-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7846-8663 bp]: array | spacers
           [Locus range 9266-9820 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADBZ010000002.1 Clostridioides difficile strain 078NET085 genome assembly, contig: ERS138086SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 542669 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 43843-43937 bp Zoom in on locus 1 x2 CRISPR array Location: 43843-43937 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 43843-43937 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 43843-43937 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADBZ010000006.1 Clostridioides difficile strain 078NET085 genome assembly, contig: ERS138086SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 230735 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 140449-140674 bp Zoom in on locus 1 x4 CRISPR array Location: 140449-140674 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 140449-140674 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 140449-140674 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADBZ010000001.1 Clostridioides difficile strain 078NET085 genome assembly, contig: ERS138086SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 739073 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 250087-250313 bp 2 Locus 2: 416070-423935 bp 3 Locus 3: 498156-498712 bp Zoom in on locus 1 x4 Zoom in on locus 2 Zoom in on locus 3 x9 CRISPR array Location: 250087-250313 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 250087-250313 bp Num of repeats: 4 Spacers: s1-s3 Gene: cd09641:cas3HD Type: Type-I Location: 416070-418478 bp Gene: cd09693:cas5 Type: Type-I Location: 418505-419302 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 419318-420331 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 420351-421826 bp Gene: pfam01881:cas6 Type: other Location: 421831-422568 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 422826-423935 bp CRISPR array Location: 498156-498712 bp Num of repeats: 9 Spacers: s4-s11 CRISPR array Location: 498156-498712 bp Num of repeats: 9 Spacers: s4-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 250087-250313 bp]: array | spacers
           [Locus range 498156-498712 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)