CRISPRone

CRISPRone report for GCA_900689745.1_8080_2_83

♦ Seq 1: CAADCA010000001.1 Clostridioides difficile strain 078NET084 genome assembly, contig: ERS138085SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 739082 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 240363-240920 bp 2 Locus 2: 315140-323005 bp 3 Locus 3: 488762-488989 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x4 CRISPR array Location: 240363-240920 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 240363-240920 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 315140-316249 bp Gene: pfam01881:cas6 Type: other Location: 316507-317244 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 317249-318724 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 318744-319757 bp Gene: cd09693:cas5 Type: Type-I Location: 319773-320570 bp Gene: cd09641:cas3HD Type: Type-I Location: 320597-323005 bp CRISPR array Location: 488762-488989 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 488762-488989 bp Num of repeats: 4 Spacers: s9-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 240363-240920 bp]: array | spacers
           [Locus range 488762-488989 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADCA010000026.1 Clostridioides difficile strain 078NET084 genome assembly, contig: ERS138085SCcontig000026, whole genome shotgun sequence

⇒Summary: seq-len = 18267 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6190-8098 bp Zoom in on locus 1 x8 x13 CRISPR array Location: 6190-6678 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 6190-6678 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 7280-8098 bp Num of repeats: 13 Spacers: s8-s19 CRISPR array Location: 7280-8098 bp Num of repeats: 13 Spacers: s8-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6190-6678 bp]: array | spacers
           [Locus range 7280-8098 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADCA010000002.1 Clostridioides difficile strain 078NET084 genome assembly, contig: ERS138085SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 542543 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 498760-498853 bp Zoom in on locus 1 x2 CRISPR array Location: 498760-498853 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 498760-498853 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 498760-498853 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADCA010000003.1 Clostridioides difficile strain 078NET084 genome assembly, contig: ERS138085SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 523954 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 138278-138705 bp 2 Locus 2: 342239-342661 bp 3 Locus 3: 459010-459769 bp Zoom in on locus 1 x7 Zoom in on locus 2 x7 Zoom in on locus 3 x12 CRISPR array Location: 138278-138705 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 138278-138705 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 342239-342661 bp Num of repeats: 7 Spacers: s7-s12 CRISPR array Location: 342239-342661 bp Num of repeats: 7 Spacers: s7-s12 CRISPR array Location: 459010-459769 bp Num of repeats: 12 Spacers: s13-s23 CRISPR array Location: 459010-459769 bp Num of repeats: 12 Spacers: s13-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 138278-138705 bp]: array | spacers
           [Locus range 342239-342661 bp]: array | spacers
           [Locus range 459010-459769 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADCA010000007.1 Clostridioides difficile strain 078NET084 genome assembly, contig: ERS138085SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 185261 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 89682-89908 bp Zoom in on locus 1 x4 CRISPR array Location: 89682-89908 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 89682-89908 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 89682-89908 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADCA010000006.1 Clostridioides difficile strain 078NET084 genome assembly, contig: ERS138085SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 186217 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 138845-140585 bp Zoom in on locus 1 x27 CRISPR array Location: 138845-140585 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 138845-140585 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 138845-140585 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)