CRISPRone

CRISPRone report for GCA_900689755.1_8080_2_89

♦ Seq 1: CAADCB010000009.1 Clostridioides difficile strain 078GUE005 genome assembly, contig: ERS138091SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 147302 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125789-137487 bp Zoom in on locus 1 x33 CRISPR array Location: 125789-127910 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 125789-127910 bp Num of repeats: 33 Spacers: s1-s32 Gene: cd09725:cas2 Type: universal Location: 128094-128360 bp Gene: cd09722:cas1 Type: universal Location: 128363-129343 bp Gene: pfam01930:cas4 Type: Type-I Location: 129346-129864 bp Gene: COG1203:cas3 Type: Type-I Location: 129912-132233 bp Gene: cd09693:cas5 Type: Type-I Location: 132244-132945 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 132947-133861 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 133863-135713 bp Gene: pfam01881:cas6 Type: other Location: 135719-136456 bp Gene: pfam13280:WYL Type: other Location: 136534-137487 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 125789-127910 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADCB010000003.1 Clostridioides difficile strain 078GUE005 genome assembly, contig: ERS138091SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 258417 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97855-108808 bp 2 Locus 2: 161411-169738 bp Zoom in on locus 1 Zoom in on locus 2 Gene: cd06127:DEDDh Type: Type-I Location: 97855-98361 bp Gene: unk Type: unknown Location: 98520-99188 bp Gene: unk Type: unknown Location: 99601-100107 bp Gene: cd06127:DEDDh Type: Type-I Location: 100471-101508 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 108323-108808 bp Gene: cd09641:cas3HD Type: Type-I Location: 161411-163819 bp Gene: cd09693:cas5 Type: Type-I Location: 163846-164643 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 164659-165672 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 165691-167157 bp Gene: pfam01881:cas6 Type: other Location: 167162-167899 bp Gene: unk Type: unknown Location: 168000-168176 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 168629-169738 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADCB010000011.1 Clostridioides difficile strain 078GUE005 genome assembly, contig: ERS138091SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 140785 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61731-73384 bp Zoom in on locus 1 x40 Gene: cd09725:cas2 Type: universal Location: 61731-62021 bp Gene: cd09722:cas1 Type: universal Location: 62232-63239 bp Gene: pfam01930:cas4 Type: Type-I Location: 63265-63759 bp CRISPR array Location: 63844-66442 bp Num of repeats: 40 Spacers: s1-s39 CRISPR array Location: 63844-66442 bp Num of repeats: 40 Spacers: s1-s39 Gene: unk Type: unknown Location: 64467-64595 bp Gene: cd09641:cas3HD Type: Type-I Location: 66632-69190 bp Gene: cd09693:cas5 Type: Type-I Location: 69214-69954 bp Gene: pfam05107:cas7b Type: Type-I Location: 69956-70945 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 70938-72677 bp Gene: cd09652:cas6 Type: other Location: 72689-73384 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 63844-66442 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADCB010000020.1 Clostridioides difficile strain 078GUE005 genome assembly, contig: ERS138091SCcontig000020, whole genome shotgun sequence

⇒Summary: seq-len = 75978 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 73247-74395 bp Zoom in on locus 1 x18 CRISPR array Location: 73247-74395 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 73247-74395 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 73247-74395 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADCB010000001.1 Clostridioides difficile strain 078GUE005 genome assembly, contig: ERS138091SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 323452 bp; # of CRISPR array = 2; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 227261-239307 bp 2 Locus 2: 276810-277623 bp Zoom in on locus 1 x40 Zoom in on locus 2 x13 CRISPR array Location: 227261-229861 bp Num of repeats: 40 Spacers: s1-s39 CRISPR array Location: 227261-229861 bp Num of repeats: 40 Spacers: s1-s39 Gene: cd09718:cas1 Type: universal Location: 237263-238918 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 238930-239307 bp CRISPR array Location: 276810-277623 bp Num of repeats: 13 Spacers: s40-s51 CRISPR array Location: 276810-277623 bp Num of repeats: 13 Spacers: s40-s51 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 227261-229861 bp]: array | spacers
           [Locus range 276810-277623 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADCB010000002.1 Clostridioides difficile strain 078GUE005 genome assembly, contig: ERS138091SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 295259 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 104051-104677 bp Zoom in on locus 1 x10 CRISPR array Location: 104051-104677 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 104051-104677 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 104051-104677 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)