CRISPRone

CRISPRone report for GCA_900689765.1_8080_2_87

♦ Seq 1: CAADCC010000003.1 Clostridioides difficile strain 078GUE003 genome assembly, contig: ERS138089SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 258421 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 88680-97007 bp 2 Locus 2: 149610-160563 bp Zoom in on locus 1 Zoom in on locus 2 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 88680-89789 bp Gene: unk Type: unknown Location: 90242-90418 bp Gene: pfam01881:cas6 Type: other Location: 90519-91256 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 91261-92727 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 92746-93759 bp Gene: cd09693:cas5 Type: Type-I Location: 93775-94572 bp Gene: cd09641:cas3HD Type: Type-I Location: 94599-97007 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 149610-150095 bp Gene: cd06127:DEDDh Type: Type-I Location: 156910-157947 bp Gene: unk Type: unknown Location: 158311-158817 bp Gene: unk Type: unknown Location: 159230-159898 bp Gene: cd06127:DEDDh Type: Type-I Location: 160057-160563 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADCC010000002.1 Clostridioides difficile strain 078GUE003 genome assembly, contig: ERS138089SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 295265 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 104053-104679 bp Zoom in on locus 1 x10 CRISPR array Location: 104053-104679 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 104053-104679 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 104053-104679 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADCC010000009.1 Clostridioides difficile strain 078GUE003 genome assembly, contig: ERS138089SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 147254 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9816-21515 bp Zoom in on locus 1 x33 Gene: pfam13280:WYL Type: other Location: 9816-10769 bp Gene: pfam01881:cas6 Type: other Location: 10847-11584 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 11590-13440 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 13442-14356 bp Gene: cd09693:cas5 Type: Type-I Location: 14358-15059 bp Gene: COG1203:cas3 Type: Type-I Location: 15070-17391 bp Gene: pfam01930:cas4 Type: Type-I Location: 17406-17957 bp Gene: cd09722:cas1 Type: universal Location: 17960-18940 bp Gene: cd09725:cas2 Type: universal Location: 18943-19209 bp CRISPR array Location: 19393-21515 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 19393-21515 bp Num of repeats: 33 Spacers: s1-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19393-21515 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADCC010000001.1 Clostridioides difficile strain 078GUE003 genome assembly, contig: ERS138089SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 428913 bp; # of CRISPR array = 2; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 332458-344768 bp 2 Locus 2: 382271-383084 bp Zoom in on locus 1 x44 Zoom in on locus 2 x13 CRISPR array Location: 332458-335322 bp Num of repeats: 44 Spacers: s1-s43 CRISPR array Location: 332458-335322 bp Num of repeats: 44 Spacers: s1-s43 Gene: cd09718:cas1 Type: universal Location: 342724-344379 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 344391-344768 bp CRISPR array Location: 382271-383084 bp Num of repeats: 13 Spacers: s44-s55 CRISPR array Location: 382271-383084 bp Num of repeats: 13 Spacers: s44-s55 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 332458-335322 bp]: array | spacers
           [Locus range 382271-383084 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADCC010000022.1 Clostridioides difficile strain 078GUE003 genome assembly, contig: ERS138089SCcontig000022, whole genome shotgun sequence

⇒Summary: seq-len = 65799 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63050-64198 bp Zoom in on locus 1 x18 CRISPR array Location: 63050-64198 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 63050-64198 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63050-64198 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADCC010000011.1 Clostridioides difficile strain 078GUE003 genome assembly, contig: ERS138089SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 140781 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61727-73380 bp Zoom in on locus 1 x40 Gene: cd09725:cas2 Type: universal Location: 61727-62017 bp Gene: cd09722:cas1 Type: universal Location: 62228-63235 bp Gene: pfam01930:cas4 Type: Type-I Location: 63261-63755 bp CRISPR array Location: 63840-66438 bp Num of repeats: 40 Spacers: s1-s39 CRISPR array Location: 63840-66438 bp Num of repeats: 40 Spacers: s1-s39 Gene: unk Type: unknown Location: 64463-64591 bp Gene: cd09641:cas3HD Type: Type-I Location: 66628-69186 bp Gene: cd09693:cas5 Type: Type-I Location: 69210-69950 bp Gene: pfam05107:cas7b Type: Type-I Location: 69952-70941 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 70934-72673 bp Gene: cd09652:cas6 Type: other Location: 72685-73380 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 63840-66438 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)