CRISPRone

CRISPRone report for GCA_900689775.1_8080_2_9

♦ Seq 1: CAADCD010000002.1 Clostridioides difficile strain 078NET009 genome assembly, contig: ERS138011SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 295262 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190584-191211 bp Zoom in on locus 1 x10 CRISPR array Location: 190584-191211 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 190584-191211 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 190584-191211 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADCD010000022.1 Clostridioides difficile strain 078NET009 genome assembly, contig: ERS138011SCcontig000022, whole genome shotgun sequence

⇒Summary: seq-len = 65769 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1584-2733 bp Zoom in on locus 1 x18 CRISPR array Location: 1584-2733 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 1584-2733 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1584-2733 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADCD010000009.1 Clostridioides difficile strain 078NET009 genome assembly, contig: ERS138011SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 147254 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125741-137439 bp Zoom in on locus 1 x33 CRISPR array Location: 125741-127862 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 125741-127862 bp Num of repeats: 33 Spacers: s1-s32 Gene: cd09725:cas2 Type: universal Location: 128046-128312 bp Gene: cd09722:cas1 Type: universal Location: 128315-129295 bp Gene: pfam01930:cas4 Type: Type-I Location: 129298-129816 bp Gene: COG1203:cas3 Type: Type-I Location: 129864-132185 bp Gene: cd09693:cas5 Type: Type-I Location: 132196-132897 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 132899-133813 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 133815-135665 bp Gene: pfam01881:cas6 Type: other Location: 135671-136408 bp Gene: pfam13280:WYL Type: other Location: 136486-137439 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 125741-127862 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADCD010000001.1 Clostridioides difficile strain 078NET009 genome assembly, contig: ERS138011SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 428912 bp; # of CRISPR array = 2; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 332458-344768 bp 2 Locus 2: 382271-383084 bp Zoom in on locus 1 x44 Zoom in on locus 2 x13 CRISPR array Location: 332458-335322 bp Num of repeats: 44 Spacers: s1-s43 CRISPR array Location: 332458-335322 bp Num of repeats: 44 Spacers: s1-s43 Gene: cd09718:cas1 Type: universal Location: 342724-344379 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 344391-344768 bp CRISPR array Location: 382271-383084 bp Num of repeats: 13 Spacers: s44-s55 CRISPR array Location: 382271-383084 bp Num of repeats: 13 Spacers: s44-s55 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 332458-335322 bp]: array | spacers
           [Locus range 382271-383084 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADCD010000003.1 Clostridioides difficile strain 078NET009 genome assembly, contig: ERS138011SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 258417 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97855-108808 bp 2 Locus 2: 161411-169738 bp Zoom in on locus 1 Zoom in on locus 2 Gene: cd06127:DEDDh Type: Type-I Location: 97855-98361 bp Gene: unk Type: unknown Location: 98520-99188 bp Gene: unk Type: unknown Location: 99601-100107 bp Gene: cd06127:DEDDh Type: Type-I Location: 100471-101508 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 108323-108808 bp Gene: cd09641:cas3HD Type: Type-I Location: 161411-163819 bp Gene: cd09693:cas5 Type: Type-I Location: 163846-164643 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 164659-165672 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 165691-167157 bp Gene: pfam01881:cas6 Type: other Location: 167162-167899 bp Gene: unk Type: unknown Location: 168000-168176 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 168629-169738 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADCD010000011.1 Clostridioides difficile strain 078NET009 genome assembly, contig: ERS138011SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 140781 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 67402-79055 bp Zoom in on locus 1 x40 Gene: cd09652:cas6 Type: other Location: 67402-68097 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 68109-69848 bp Gene: pfam05107:cas7b Type: Type-I Location: 69841-70830 bp Gene: cd09693:cas5 Type: Type-I Location: 70832-71572 bp Gene: cd09641:cas3HD Type: Type-I Location: 71596-74154 bp CRISPR array Location: 74344-76943 bp Num of repeats: 40 Spacers: s1-s39 CRISPR array Location: 74344-76943 bp Num of repeats: 40 Spacers: s1-s39 Gene: pfam01930:cas4 Type: Type-I Location: 77027-77521 bp Gene: cd09722:cas1 Type: universal Location: 77547-78554 bp Gene: cd09725:cas2 Type: universal Location: 78765-79055 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 74344-76943 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)