CRISPRone

CRISPRone report for GCA_900689825.1_8080_2_96

♦ Seq 1: CAADCE010000010.1 Clostridioides difficile strain 078GUE012 genome assembly, contig: ERS138098SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 147261 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9823-21522 bp Zoom in on locus 1 x33 Gene: pfam13280:WYL Type: other Location: 9823-10776 bp Gene: pfam01881:cas6 Type: other Location: 10854-11591 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 11597-13447 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 13449-14363 bp Gene: cd09693:cas5 Type: Type-I Location: 14365-15066 bp Gene: COG1203:cas3 Type: Type-I Location: 15077-17398 bp Gene: pfam01930:cas4 Type: Type-I Location: 17413-17964 bp Gene: cd09722:cas1 Type: universal Location: 17967-18947 bp Gene: cd09725:cas2 Type: universal Location: 18950-19216 bp CRISPR array Location: 19400-21522 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 19400-21522 bp Num of repeats: 33 Spacers: s1-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19400-21522 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADCE010000002.1 Clostridioides difficile strain 078GUE012 genome assembly, contig: ERS138098SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 294021 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 104138-104764 bp Zoom in on locus 1 x10 CRISPR array Location: 104138-104764 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 104138-104764 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 104138-104764 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADCE010000003.1 Clostridioides difficile strain 078GUE012 genome assembly, contig: ERS138098SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 258499 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 88687-97014 bp 2 Locus 2: 149617-160570 bp Zoom in on locus 1 Zoom in on locus 2 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 88687-89796 bp Gene: unk Type: unknown Location: 90249-90425 bp Gene: pfam01881:cas6 Type: other Location: 90526-91263 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 91268-92734 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 92753-93766 bp Gene: cd09693:cas5 Type: Type-I Location: 93782-94579 bp Gene: cd09641:cas3HD Type: Type-I Location: 94606-97014 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 149617-150102 bp Gene: cd06127:DEDDh Type: Type-I Location: 156917-157954 bp Gene: unk Type: unknown Location: 158318-158824 bp Gene: unk Type: unknown Location: 159237-159905 bp Gene: cd06127:DEDDh Type: Type-I Location: 160064-160570 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADCE010000019.1 Clostridioides difficile strain 078GUE012 genome assembly, contig: ERS138098SCcontig000019, whole genome shotgun sequence

⇒Summary: seq-len = 75977 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1584-2733 bp Zoom in on locus 1 x18 CRISPR array Location: 1584-2733 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 1584-2733 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1584-2733 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADCE010000001.1 Clostridioides difficile strain 078GUE012 genome assembly, contig: ERS138098SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 464948 bp; # of CRISPR array = 3; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 227269-239579 bp 2 Locus 2: 277082-277895 bp 3 Locus 3: 385887-397540 bp Zoom in on locus 1 x44 Zoom in on locus 2 x13 Zoom in on locus 3 x40 CRISPR array Location: 227269-230133 bp Num of repeats: 44 Spacers: s1-s43 CRISPR array Location: 227269-230133 bp Num of repeats: 44 Spacers: s1-s43 Gene: cd09718:cas1 Type: universal Location: 237535-239190 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 239202-239579 bp CRISPR array Location: 277082-277895 bp Num of repeats: 13 Spacers: s44-s55 CRISPR array Location: 277082-277895 bp Num of repeats: 13 Spacers: s44-s55 Gene: cd09725:cas2 Type: universal Location: 385887-386177 bp Gene: cd09722:cas1 Type: universal Location: 386388-387395 bp Gene: pfam01930:cas4 Type: Type-I Location: 387421-387915 bp CRISPR array Location: 388000-390598 bp Num of repeats: 40 Spacers: s56-s94 CRISPR array Location: 388000-390598 bp Num of repeats: 40 Spacers: s56-s94 Gene: unk Type: unknown Location: 388623-388751 bp Gene: cd09641:cas3HD Type: Type-I Location: 390788-393346 bp Gene: cd09693:cas5 Type: Type-I Location: 393370-394110 bp Gene: pfam05107:cas7b Type: Type-I Location: 394112-395101 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 395094-396833 bp Gene: cd09652:cas6 Type: other Location: 396845-397540 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 227269-230133 bp]: array | spacers
           [Locus range 277082-277895 bp]: array | spacers
           [Locus range 388000-390598 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)