CRISPRone

CRISPRone report for GCA_900689855.1_8080_2_92

♦ Seq 1: CAADCG010000003.1 Clostridioides difficile strain 078GUE008 genome assembly, contig: ERS138094SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 258494 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 88680-97007 bp 2 Locus 2: 149610-160563 bp Zoom in on locus 1 Zoom in on locus 2 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 88680-89789 bp Gene: unk Type: unknown Location: 90242-90418 bp Gene: pfam01881:cas6 Type: other Location: 90519-91256 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 91261-92727 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 92746-93759 bp Gene: cd09693:cas5 Type: Type-I Location: 93775-94572 bp Gene: cd09641:cas3HD Type: Type-I Location: 94599-97007 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 149610-150095 bp Gene: cd06127:DEDDh Type: Type-I Location: 156910-157947 bp Gene: unk Type: unknown Location: 158311-158817 bp Gene: unk Type: unknown Location: 159230-159898 bp Gene: cd06127:DEDDh Type: Type-I Location: 160057-160563 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADCG010000021.1 Clostridioides difficile strain 078GUE008 genome assembly, contig: ERS138094SCcontig000021, whole genome shotgun sequence

⇒Summary: seq-len = 75977 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 73246-74394 bp Zoom in on locus 1 x18 CRISPR array Location: 73246-74394 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 73246-74394 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 73246-74394 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADCG010000005.1 Clostridioides difficile strain 078GUE008 genome assembly, contig: ERS138094SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 215708 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 109798-109958 bp Zoom in on locus 1 x3 CRISPR array Location: 109798-109958 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 109798-109958 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 109798-109958 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADCG010000001.1 Clostridioides difficile strain 078GUE008 genome assembly, contig: ERS138094SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 341683 bp; # of CRISPR array = 2; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45896-46710 bp 2 Locus 2: 102122-114433 bp Zoom in on locus 1 x13 Zoom in on locus 2 x44 CRISPR array Location: 45896-46710 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 45896-46710 bp Num of repeats: 13 Spacers: s1-s12 Gene: COG0640:csa3 Type: Subtype-I-A Location: 102122-102499 bp Gene: cd09718:cas1 Type: universal Location: 102511-104166 bp CRISPR array Location: 111568-114433 bp Num of repeats: 44 Spacers: s13-s55 CRISPR array Location: 111568-114433 bp Num of repeats: 44 Spacers: s13-s55 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 45896-46710 bp]: array | spacers
           [Locus range 111568-114433 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADCG010000011.1 Clostridioides difficile strain 078GUE008 genome assembly, contig: ERS138094SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 140796 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 67475-79062 bp Zoom in on locus 1 x39 Gene: cd09652:cas6 Type: other Location: 67475-68170 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 68182-69921 bp Gene: pfam05107:cas7b Type: Type-I Location: 69914-70903 bp Gene: cd09693:cas5 Type: Type-I Location: 70905-71645 bp Gene: cd09641:cas3HD Type: Type-I Location: 71669-74227 bp CRISPR array Location: 74417-76950 bp Num of repeats: 39 Spacers: s1-s38 CRISPR array Location: 74417-76950 bp Num of repeats: 39 Spacers: s1-s38 Gene: pfam01930:cas4 Type: Type-I Location: 77034-77528 bp Gene: cd09722:cas1 Type: universal Location: 77554-78561 bp Gene: cd09725:cas2 Type: universal Location: 78772-79062 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 74417-76950 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADCG010000004.1 Clostridioides difficile strain 078GUE008 genome assembly, contig: ERS138094SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 217123 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 52246-54686 bp Zoom in on locus 1 Gene: cas14:cas14 Type: Type-V Location: 52246-52539 bp Gene: unk Type: unknown Location: 52978-53364 bp Gene: unk Type: unknown Location: 53591-54316 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 54318-54686 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAADCG010000010.1 Clostridioides difficile strain 078GUE008 genome assembly, contig: ERS138094SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 147255 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9816-21515 bp Zoom in on locus 1 x33 Gene: pfam13280:WYL Type: other Location: 9816-10769 bp Gene: pfam01881:cas6 Type: other Location: 10847-11584 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 11590-13440 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 13442-14356 bp Gene: cd09693:cas5 Type: Type-I Location: 14358-15059 bp Gene: COG1203:cas3 Type: Type-I Location: 15070-17391 bp Gene: pfam01930:cas4 Type: Type-I Location: 17406-17957 bp Gene: cd09722:cas1 Type: universal Location: 17960-18940 bp Gene: cd09725:cas2 Type: universal Location: 18943-19209 bp CRISPR array Location: 19393-21515 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 19393-21515 bp Num of repeats: 33 Spacers: s1-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19393-21515 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)